Flexible Regression Models for Survival Data

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Documentation for package ‘timereg’ version 2.0.6

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A B C D E F G I K L M N P Q R S T V W misc

-- A --

aalen Fit additive hazards model
aalen.des For internal use
aalen.des2 For internal use
aalenBase For internal use
aalenBaseC For internal use
additive.compSs For internal use
as.character.Event Event history object
as.matrix.Event Event history object

-- B --

bmt The Bone Marrow Transplant Data

-- C --

cd4 The multicenter AIDS cohort study
check.missing For internal use
cluster.index.timereg For internal use
coef.aalen For internal use
coef.comprisk For internal use
coef.comprisk.ipw For internal use
coef.cox.aalen For internal use
coef.cox.ipw Missing data IPW Cox
coef.cox.marg For internal use
coef.dynreg For internal use
coef.resmean For internal use
coef.timecox For internal use
coef.two.stage For internal use
coefBase For internal use
coefcox For internal use
comp.risk Competings Risks Regression
comprisk.ipw For internal use
const Identifies parametric terms of model
cox Identifies proportional excess terms of model
cox.aalen Fit Cox-Aalen survival model
cox.aalenBase For internal use
cox.ipw Missing data IPW Cox
cox.marg For internal use
Cpred For internal use
csl CSL liver chirrosis data
Csmooth2B For internal use
CsmoothB For internal use
cum.residuals Model validation based on cumulative residuals

-- D --

des.aalen For internal use
diabetes The Diabetic Retinopathy Data
dynreg Fit time-varying regression model
dynregBase For internal use

-- E --

Event Event history object
event.split EventSplit (SurvSplit).

-- F --

faster.reshape For internal use
format.Event Event history object

-- G --

Gprop.odds Fit Generalized Semiparametric Proportional 0dds Model

-- I --

is.diag For internal use

-- K --

kernel For internal use
kmplot For internal use
krylow.pls Fits Krylow based PLS for additive hazards model

-- L --

localTimeReg For internal use

-- M --

mela.pop Melanoma data and Danish population mortality by age and sex
melanoma The Melanoma Survival Data
mypbc my version of the PBC data of the survival package

-- N --

nameestimate For internal use
namematrix For internal use
names2formula For internal use

-- P --

pava For internal use
pava.pred Make predictions of predict functions in rows mononotone
pe.sasieni Fits Proportional excess hazards model with fixed offsets
percen For internal use
plot.aalen Plots estimates and test-processes
plot.comprisk For internal use
plot.cox.aalen Plots estimates and test-processes
plot.cox.aalen2 For internal use
plot.cum.residuals Plots cumulative residuals
plot.cums For internal use
plot.dynreg Plots estimates and test-processes
plot.predict For internal use
plot.predict.comprisk For internal use
plot.predict.timereg For internal use
plot.prop.excess Plots estimates and test-processes
plot.resmean For internal use
plot.restricted.residual.mean For internal use
plot.timecox Plots estimates and test-processes
plot.two.stage For internal use
plotConfregion For internal use
plotScore For internal use
pred.cum For internal use
pred.des For internal use
pred.stratKM For internal use
predict.aalen Predictions for Survival and Competings Risks Regression for timereg
predict.comprisk Predictions for Survival and Competings Risks Regression for timereg
predict.cox.aalen Predictions for Survival and Competings Risks Regression for timereg
predict.timereg Predictions for Survival and Competings Risks Regression for timereg
predict.two.stage For internal use
predictpropodds For internal use
prep.comp.risk Set up weights for delayed-entry competing risks data for comp.risk function
prep.glm.comprisk For internal use
print.aalen Prints call
print.comprisk Prints call
print.comprisk.ipw For internal use
print.cox.aalen Prints call
print.cox.ipw Missing data IPW Cox
print.cox.marg For internal use
print.cum.residuals Prints call
print.dynreg Prints call
print.Event Event history object
print.pe.sasieni For internal use
print.predict.timereg For internal use
print.prop.excess Prints call
print.resmean For internal use
print.timecox Prints call
print.two.stage For internal use
prop Identifies the multiplicative terms in Cox-Aalen model and proportional excess risk model
prop.excess Fits Proportional excess hazards model
prop.excessBase For internal use
prop.odds Fit Semiparametric Proportional 0dds Model
prop.odds.gam For internal use
prop.odds.subdist Fit Semiparametric Proportional 0dds Model for the competing risks subdistribution
prop.odds.subdist.ipw For internal use
pval For internal use

-- Q --

qcut Cut a variable

-- R --

rbind.Event Event history object
read-design For internal use
read.design For internal use
read.surv For internal use
recurrent.marginal.coxmean Estimates marginal mean of recurrent events based on two cox models
recurrent.marginal.mean Estimates marginal mean of recurrent events
res.mean Residual mean life (restricted)
residualsTimereg For internal use
restricted.residual.mean Estimates restricted residual mean for Cox or Aalen model
risk.index For internal use
rm.missing For internal use

-- S --

semiaalen For internal use
semicox For internal use
semiregBase For internal use
sindex.prodlim For internal use
slaaop For internal use
sTRACE The TRACE study group of myocardial infarction
summary.aalen Prints summary statistics
summary.comprisk For internal use
summary.comprisk.ipw For internal use
summary.cox.aalen Prints summary statistics
summary.cox.ipw Missing data IPW Cox
summary.cox.marg For internal use
summary.cum.residuals Prints summary statistics for goodness-of-fit tests based on cumulative residuals
summary.dynreg Prints summary statistics
summary.Event Event history object
summary.pe-sasieni Fits Proportional excess hazards model with fixed offsets
summary.pe.sasieni For internal use
summary.predict.timereg For internal use
summary.prop.excess Prints summary statistics
summary.resmean For internal use
summary.restricted.residual.mean For internal use
summary.timecox Prints summary statistics
summary.two.stage For internal use

-- T --

timecox Fit Cox model with partly timevarying effects.
timecoxBase For internal use
timereg.formula For internal use
timetest For internal use
TRACE The TRACE study group of myocardial infarction
tTRACE The TRACE study group of myocardial infarction
twin.clustertrunc For internal use
two.stage Fit Clayton-Oakes-Glidden Two-Stage model

-- V --

vcov.aalen For internal use
vcov.comp.risk For internal use
vcov.cox.aalen For internal use
vcov.two.stage For internal use

-- W --

wald.test Makes wald test

-- misc --

[.Event Event history object