BLASTN 2.2.26+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: NCBI Transcript Reference Sequences
           2,903,055 sequences; 4,626,651,242 total letters



Query= gi|356995852:1-490 Mus musculus POU domain, class 5, transcription
factor 1 (Pou5f1), transcript variant 1, mRNA

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ref|NM_013633.3|  Mus musculus POU domain, class 5, transcription...   905    0.0   
ref|XR_141831.1|  PREDICTED: Mus musculus predicted gene, 19553 (...   900    0.0   
ref|XR_107064.1|  PREDICTED: Mus musculus hypothetical LOC1005051...   872    0.0   
ref|XR_105908.1|  PREDICTED: Mus musculus hypothetical LOC1005051...   872    0.0   
ref|NM_001009178.2|  Rattus norvegicus POU class 5 homeobox 1 (Po...   734    0.0   
ref|NR_033594.1|  Mus musculus predicted gene 5712 (Gm5712), non-...   446    1e-122
ref|XM_003505863.1|  PREDICTED: Cricetulus griseus POU domain, cl...   433    8e-119
ref|NM_001252452.1|  Mus musculus POU domain, class 5, transcript...  73.1    2e-10 


>ref|NM_013633.3| Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), 
transcript variant 1, mRNA
Length=1353

 Score =  905 bits (490),  Expect = 0.0
 Identities = 490/490 (100%), Gaps = 0/490 (0%)
 Strand=Plus/Plus

Query  1    GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA  60

Query  61   CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG  120

Query  121  GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC  180

Query  181  AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT  240

Query  241  GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG  300

Query  301  GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG  360

Query  361  TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA  420

Query  421  AGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  AGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG  480

Query  481  AGCTAGAACA  490
            ||||||||||
Sbjct  481  AGCTAGAACA  490


>ref|XR_141831.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
 ref|XR_105837.2| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
 ref|XR_141464.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
 ref|XR_141446.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
Length=570

 Score =  900 bits (487),  Expect = 0.0
 Identities = 489/490 (99%), Gaps = 0/490 (0%)
 Strand=Plus/Minus

Query  1    GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  570  GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA  511

Query  61   CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG  451

Query  121  GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  450  GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC  391

Query  181  AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  390  AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT  331

Query  241  GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  330  GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG  271

Query  301  GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  270  GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG  211

Query  361  TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  210  TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA  151

Query  421  AGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG  480
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  150  AGTTGGAGAAGGTGGAACCAACTCCAGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG  91

Query  481  AGCTAGAACA  490
            ||||||||||
Sbjct  90   AGCTAGAACA  81


>ref|XR_107064.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104), 
partial miscRNA
Length=505

 Score =  872 bits (472),  Expect = 0.0
 Identities = 474/475 (99%), Gaps = 0/475 (0%)
 Strand=Plus/Minus

Query  16   CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG  75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  505  CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG  446

Query  76   GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG  386

Query  136  GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG  195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  385  GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG  326

Query  196  GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  325  GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG  266

Query  256  AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG  315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG  206

Query  316  TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG  146

Query  376  AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG  86

Query  436  AACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA  490
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   AACCAACTCCAGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA  31


>ref|XR_105908.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104), 
partial miscRNA
Length=505

 Score =  872 bits (472),  Expect = 0.0
 Identities = 474/475 (99%), Gaps = 0/475 (0%)
 Strand=Plus/Minus

Query  16   CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG  75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  505  CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG  446

Query  76   GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG  386

Query  136  GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG  195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  385  GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG  326

Query  196  GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  325  GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG  266

Query  256  AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG  315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG  206

Query  316  TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG  146

Query  376  AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG  86

Query  436  AACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA  490
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   AACCAACTCCAGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA  31


>ref|NM_001009178.2| Rattus norvegicus POU class 5 homeobox 1 (Pou5f1), mRNA
 gb|BC158566.1| Rattus norvegicus POU class 5 homeobox 1, mRNA (cDNA clone MGC:187285 
IMAGE:9092936), complete cds
Length=1388

 Score =  734 bits (397),  Expect = 0.0
 Identities = 459/489 (94%), Gaps = 3/489 (1%)
 Strand=Plus/Plus

Query  1    GAGGTG-AAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCC  59
            |||||| |||| ||||||||||||| |||| |||||||||||||||||||||||| ||||
Sbjct  12   GAGGTGCAAACAGTCCCTAGGTGAGTCGTCCTTCCACCAGGCCCCCGGCTCGGGGAGCCC  71

Query  60   ACCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  72   ACCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCTGGTGGG  131

Query  120  GGTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTC  179
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  132  GGTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGACCCTCGAACCTGGCTAAGCTTC  191

Query  180  CAAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCA  239
            || ||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||| 
Sbjct  192  CAGGGGCCTCCAAGTGGGCCTGGAATCGGACCAGGTTCAGAGGTGCTGGGGATCTCCCCG  251

Query  240  TGTCCGCCC-GCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACT  298
            ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  252  TGTCC-CCCAGCATACGAGTTCTGTGGAGGGATGGCATACTGTGGACCTCAGGTTGGACT  310

Query  299  GGGCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACG  358
            ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  311  GGGCCTAGTCCCCCAAGTTGGCGTGGAGACTCTGCAGCCCGAGGGCCAGGCAGGAGCACG  370

Query  359  AGTGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGT  418
            |||||| |||||||| |||||| ||||||||| ||||||| | | ||||||||  |||||
Sbjct  371  AGTGGAGAGCAACTCGGAGGGAGCCTCCTCTGGGCCCTGTACTGCCCGCCCCAGCGCCGT  430

Query  419  GAAGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAA  478
            ||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct  431  GAAGTTGGAGAAGGTGGAACCTAGTCCCGAGGAGTCCCAGGATATGAAAGCCCTGCAGAA  490

Query  479  GGAGCTAGA  487
            |||||||||
Sbjct  491  GGAGCTAGA  499


>ref|NR_033594.1| Mus musculus predicted gene 5712 (Gm5712), non-coding RNA
Length=1040

 Score =  446 bits (241),  Expect = 1e-122
 Identities = 367/422 (87%), Gaps = 32/422 (8%)
 Strand=Plus/Plus

Query  69   ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGG  128
            |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  1    ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCC-ACCAGGTGGGGGCGATGGG  59

Query  129  TCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCT  188
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  60   TCAGCAGGGCTGGAGCCGGGCTGGGTGGACCCTCGAACCTGGCTAAGCTTCCAAGGGCCT  119

Query  189  CCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCC  248
            |  |||||||||||||| |||||||||| |||||||||||| |||||||||||||| || 
Sbjct  120  CTGGGTGGGCCTGGAATAGGACCAGGCTTAGAGGTATTGGG-ATCTCCCCATGTCCACCG  178

Query  249  GCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTC  308
            | ||| |||||||||||||||||||||||||||||||||||||     |||| |   || 
Sbjct  179  GTATATGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGG-----CTGG-C---GT-  228

Query  309  CCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGC  368
                  |  |      ||||||||||||||||| |||||||| ||||| | ||||| |||
Sbjct  229  ------G--G------AGACTTTGCAGCCTGAGAGCCAGGCAAGAGCAGGTGTGGAGAGC  274

Query  369  AACTCAGAGGGAA-CCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGA  427
            |||||||||| || ||| ||||| ||| |||||||||| ||||| |||||||||||||||
Sbjct  275  AACTCAGAGG-AAGCCTTCTCTGGGCCTTGTGCCGACCACCCCAGTGCCGTGAAGTTGGA  333

Query  428  GAAG-GTGGAACCAAC-TCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTA  485
            || | | ||||||| | |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  334  GATGAG-GGAACCA-CGTCCCGAGGGGTCCCAGGACATGAAAGTCCTGCAGAAGGAGCTA  391

Query  486  GA  487
            ||
Sbjct  392  GA  393


>ref|XM_003505863.1| PREDICTED: Cricetulus griseus POU domain, class 5, transcription 
factor 1-like (LOC100754998), mRNA
Length=1077

 Score =  433 bits (234),  Expect = 8e-119
 Identities = 377/442 (85%), Gaps = 25/442 (6%)
 Strand=Plus/Plus

Query  69   ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGG  128
            |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct  1    ATGGCTGGACACCTGGCTTCAGACTTTGCCTTCTCACCTCCACCTGGTGGGGGTGATGGG  60

Query  129  TCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCT  188
            |||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| 
Sbjct  61   TCAGGAGGGCTGGAGCCTGGCTGGGTGGACCCTCGGACCTGGCTAAGCTTCCAAGGGCCA  120

Query  189  CCAGGTGGGCCTGGAAT-----C-------GGACCAGGCTCAGAGGTATTGGGGATCTCC  236
            |||||||||||||||||     |       |||||||||||||| ||  ||||||| |||
Sbjct  121  CCAGGTGGGCCTGGAATCGGGCCAGGGGTTGGACCAGGCTCAGAAGTGCTGGGGATTTCC  180

Query  237  CCATGTCCGCCC-GCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGG  295
            || ||||| |||  ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct  181  CCTTGTCC-CCCACCATACGAGTTCTGTGGAGGGGTGGCATACTGTGGACCTCAGGTTGG  239

Query  296  ACTGGGCCTAGTCCC-CCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAG  354
            |||||| ||||| || ||| |||||| |||||||||  ||||||||||||||| ||||||
Sbjct  240  ACTGGGTCTAGTGCCGCCA-GTTGGCCTGGAGACTTCACAGCCTGAGGGCCAGTCAGGAG  298

Query  355  CACGAGTGGA-AAGCAACTCAGAGG-GAACCTCCTCTGAGCCCTGTGCCGACC-GCCCCA  411
            || ||||||| || | |||| |||| |  ||||| ||| ||||||| | | || | ||||
Sbjct  299  CAGGAGTGGAGAA-CGACTCGGAGGAGT-CCTCCCCTGGGCCCTGTACTG-CCAGGCCCA  355

Query  412  ATG-CC--GTGAAGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAG  468
             || ||  ||||||||||||||||||||||| | ||||||||||||||||||  |||| |
Sbjct  356  TTGTCCCCGTGAAGTTGGAGAAGGTGGAACCGAGTCCCGAGGAGTCCCAGGATGTGAAGG  415

Query  469  CCCTGCAGAAGGAGCTAGAACA  490
            || |||||||||| || |||||
Sbjct  416  CCTTGCAGAAGGAACTGGAACA  437


>ref|NM_001252452.1| Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), 
transcript variant 2, mRNA
Length=991

 Score = 73.1 bits (39),  Expect = 2e-10
 Identities = 39/39 (100%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  452  GTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA  490
            |||||||||||||||||||||||||||||||||||||||
Sbjct  90   GTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA  128



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2088197412320


  Database: NCBI Transcript Reference Sequences
    Posted date:  Mar 1, 2012  8:32 PM
  Number of letters in database: 4,626,651,242
  Number of sequences in database:  2,903,055



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5
