sivirep: Data Wrangling and Automated Reports from 'SIVIGILA' Source
Data wrangling, pre-processing, and generating automated reports from Colombia's epidemiological surveillance system, 'SIVIGILA' <https://portalsivigila.ins.gov.co/>. It provides a customizable R Markdown template for analysis and automatic generation of epidemiological reports that can be adapted to local, regional, and national contexts. This tool offers a standardized and reproducible workflow that helps to reduce manual labor and potential errors in report generation, improving their efficiency and consistency.
| Version: | 1.0.1 |
| Depends: | R (≥ 4.0.0) |
| Imports: | config, dplyr, epitrix, ggplot2, httr2, kableExtra, readxl, rlang, sf, showtext, stats, stringr, sysfonts, tools, utils, xml2 |
| Suggests: | knitr, rmarkdown, spelling, testthat (≥ 3.0.0) |
| Published: | 2024-12-03 |
| DOI: | 10.32614/CRAN.package.sivirep |
| Author: | Geraldine Gómez-Millán
 [aut, cre,
ctb],
Zulma M. Cucunubá
[aut, ctb],
Jennifer A. Mendez-Romero
[aut, ctb],
Claudia Huguett-Aragón
[aut, ctb],
Hugo Gruson [ctb],
Juanita Romero-Garcés
[ctb],
Jaime Pavlich-Mariscal
[ctb],
Laura Gómez Bermeo
[ctb],
Andrés Moreno
[ctb],
Miguel Gámez [ctb],
Johan Calderón [ctb],
Lady Flórez-Tapiero [ctb],
Verónica Tangarife-Arredondo [ctb],
Gerard Alarcon [ctb],
International Development Research Center (IDRC) [fnd],
Pontificia Universidad Javeriana [cph] |
| Maintainer: | Geraldine Gómez-Millán <geralidine.gomez at javeriana.edu.co> |
| BugReports: | https://github.com/epiverse-trace/sivirep/issues |
| License: | MIT + file LICENSE |
| URL: | https://epiverse-trace.github.io/sivirep/, https://github.com/epiverse-trace/sivirep |
| NeedsCompilation: | no |
| Language: | es-ES |
| Materials: | README, NEWS |
| In views: | Epidemiology |
| CRAN checks: | sivirep results [issues need fixing before 2025-10-28] |
Documentation:
| Reference manual: | sivirep.html , sivirep.pdf |
| Vignettes: |
sivirep (source, R code) |
Downloads:
| Package source: | sivirep_1.0.1.tar.gz |
| Windows binaries: | r-devel: sivirep_1.0.1.zip, r-release: sivirep_1.0.1.zip, r-oldrel: sivirep_1.0.1.zip |
| macOS binaries: | r-release (arm64): sivirep_1.0.1.tgz, r-oldrel (arm64): sivirep_1.0.1.tgz, r-release (x86_64): sivirep_1.0.1.tgz, r-oldrel (x86_64): sivirep_1.0.1.tgz |
| Old sources: | sivirep archive |
Linking:
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