mycolorsTB

R Color package for Mycobacterium tuberculosis complex

Installation

You can install the released version of mycolorsTB from GitHub with:

install.packages("devtools")
devtools::install_github("PathoGenOmics-Lab/mycolorsTB")

Vector of colors

show(mycolorsTB::mycolors) #vector with lineage names
show(mycolorsTB::classicTB) #vector witout lineage names

<img src=“https://github.com/PathoGenOmics-Lab/mycolorsTB/blob/main/images/mycolores.png” title=mycolors palette” style=“width:1000px; height: auto;”>

Example - ggplot()

library(ggplot2)
library(mycolorsTB)

# Example data
data <- data.frame(
  x = 1:14,
  y = rnorm(14),
  group = rep(c(paste0("A", 1:4), paste0("L", 1:10)), each = 1)
)

# Fill: Plot with mycolors lineages names
ggplot(data, aes(x = x, y = y, fill = group)) +
  geom_bar(stat = "identity") + 
  scale_fill_mycolors() + # scale_fill_manual(values = mycolors)
  theme_minimal()

<img src=“https://github.com/PathoGenOmics-Lab/mycolorsTB/blob/main/images/example1.png” title=mycolors palette” style=“width:1000px; height: auto;”>

HEX codes

• A1: #d1ae00
• A2: #8ef5c8
• A3: #73c2ff
• A4: #ff9cdb
• L1: #ff3091
• L2: #001aff
• L3: #8a0bd2
• L4: #ff0000
• L5: #995200
• L6: #1eb040
• L7: #fbff00
• L8: #ff9d00
• L9: #37ff30
• L10: #8fbda1

Newick tree

(L8,((L1,(L7,(L4,(L2,L3)))),(L5,((A2,(A3,A4)),(A1,(L10,(L6,L9)))))));