Type: Package
Title: Meta-Package for Compositional Data Analysis
Version: 0.1.3
Description: Meta-package for compositional data analysis. It attaches the main stable packages of the 'coda' ecosystem, currently 'coda.base' and 'coda.plot', and provides helper tools to install development extensions from 'GitHub'.
License: GPL (≥ 3)
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: R (≥ 4.1.0), coda.base, coda.plot
Suggests: remotes
NeedsCompilation: no
Packaged: 2026-04-15 11:31:06 UTC; marc
Author: Marc Comas-Cufí ORCID iD [aut, cre]
Maintainer: Marc Comas-Cufí <mcomas@imae.udg.edu>
Repository: CRAN
Date/Publication: 2026-04-19 14:40:07 UTC

coda.pack: Meta-Package for Compositional Data Analysis

Description

coda.pack is a meta-package for compositional data analysis. It attaches the main stable packages of the coda ecosystem.

Details

The following packages are attached by default:

Development extensions can be installed with install_coda_dev().

Value

No return value, called for its side effects of attaching the package and its imports.

Author(s)

Maintainer: Marc Comas-Cufí mcomas@imae.udg.edu (ORCID)

Examples

library(coda.pack)

Development repositories in the coda ecosystem

Description

Development repositories in the coda ecosystem

Usage

coda_dev_repos()

Value

A character vector. Each element is a GitHub repository identifier of the form "owner/repository" corresponding to a development package in the coda ecosystem.

Examples

coda_dev_repos()

List packages in the coda ecosystem

Description

Returns a data frame with the packages currently considered part of the coda ecosystem and their installation source.

Usage

coda_packages()

Value

A data frame with one row per package and two columns:

package

Package name.

source

Source from which the package can be installed, currently either "CRAN" or "GitHub".

The returned object is of class data.frame.

Examples

coda_packages()

Install development packages from the coda ecosystem

Description

Installs the development extensions of the coda ecosystem from GitHub.

Usage

install_coda_dev(upgrade = "never")

Arguments

upgrade

Upgrade policy passed to remotes::install_github().

Details

Currently, this function installs:

Value

Invisibly returns a character vector with the GitHub repositories that were passed to remotes::install_github(). Each element is of the form "owner/repository".

Update installed packages from the coda ecosystem

Description

Updates installed packages that belong to the coda ecosystem. CRAN packages are updated only if a newer version is available on CRAN. GitHub packages are updated from their development repositories.

Usage

update_coda_packages(
  installed_only = TRUE,
  ask = FALSE,
  repos = NULL,
  quiet = FALSE
)

Arguments

installed_only

Logical. If TRUE (default), only packages already installed in the current library are considered for update.

ask

Logical. Passed to utils::old.packages() for CRAN updates. Default is FALSE.

repos

Character vector of CRAN repositories passed to utils::install.packages(). If NULL, the current getOption("repos") value is used.

quiet

Logical. If TRUE, reduce console output where possible. Default is FALSE.

Details

By default, only already installed packages are considered. This avoids installing optional packages that are part of the ecosystem but not yet present in the user's library.

Value

Invisibly returns a list with components:

cran

Character vector of CRAN packages updated.

github

Character vector of GitHub packages processed for update.

skipped

Character vector of ecosystem packages skipped because they were not installed and installed_only = TRUE.