Nestimate: Network Estimation, Bootstrap, and Higher-Order Analysis

Estimate, compare, and analyze dynamic and psychological networks using a unified interface. Provides transition network analysis estimation (transition, frequency, co-occurrence, attention-weighted) Saqr et al. (2025) <doi:10.1145/3706468.3706513>, psychological network methods (correlation, partial correlation, 'graphical lasso', 'Ising') Saqr, Beck, and Lopez-Pernas (2024) <doi:10.1007/978-3-031-54464-4_19>, and higher-order network methods including higher-order networks, higher-order network embedding, hyper-path anomaly, and multi-order generative model. Supports bootstrap inference, permutation testing, split-half reliability, centrality stability analysis, mixed Markov models, multi-cluster multi-layer networks and clustering.

Version: 0.3.0
Depends: R (≥ 3.5)
Imports: ggplot2, glasso, data.table, cluster
Suggests: testthat (≥ 3.0.0), tna, cograph, igraph, glmnet, lavaan, stringdist, nnet, IsingFit, bootnet, gimme, qgraph, reticulate, gridExtra, knitr, rmarkdown, pkgdown
Published: 2026-04-08
DOI: 10.32614/CRAN.package.Nestimate (may not be active yet)
Author: Mohammed Saqr [aut, cre, cph], Sonsoles López-Pernas [aut]
Maintainer: Mohammed Saqr <saqr at saqr.me>
BugReports: https://github.com/mohsaqr/Nestimate/issues
License: MIT + file LICENSE
URL: https://github.com/mohsaqr/Nestimate
NeedsCompilation: no
Language: en-US
Materials: README, NEWS
CRAN checks: Nestimate results

Documentation:

Reference manual: Nestimate.html , Nestimate.pdf
Vignettes: Sequence Clustering (source, R code)
Co-occurrence Networks with Nestimate (source, R code)
Link Prediction and Association Rules (source, R code)
Psychological Network Analysis with Nestimate (source, R code)
Network Estimation and Analysis with Nestimate (source, R code)

Downloads:

Package source: Nestimate_0.3.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Reverse dependencies:

Reverse suggests: cograph

Linking:

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