Last updated on 2025-12-19 14:50:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.3.1 | 10.91 | 58.92 | 69.83 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.3.1 | 6.31 | 40.46 | 46.77 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.3.1 | 20.00 | 90.87 | 110.87 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.3.1 | 20.00 | 99.60 | 119.60 | ERROR | |
| r-devel-windows-x86_64 | 3.3.1 | 12.00 | 70.00 | 82.00 | OK | |
| r-patched-linux-x86_64 | 3.3.1 | 10.97 | 54.14 | 65.11 | OK | |
| r-release-linux-x86_64 | 3.3.1 | 12.50 | 54.09 | 66.59 | OK | |
| r-release-macos-arm64 | 3.3.1 | 3.00 | 19.00 | 22.00 | OK | |
| r-release-macos-x86_64 | 3.3.1 | 8.00 | 70.00 | 78.00 | OK | |
| r-release-windows-x86_64 | 3.3.1 | 11.00 | 72.00 | 83.00 | OK | |
| r-oldrel-macos-arm64 | 3.3.1 | 3.00 | 27.00 | 30.00 | OK | |
| r-oldrel-macos-x86_64 | 3.3.1 | 8.00 | 104.00 | 112.00 | OK | |
| r-oldrel-windows-x86_64 | 3.3.1 | 17.00 | 86.00 | 103.00 | OK |
Version: 3.3.1
Check: examples
Result: ERROR
Running examples in ‘ukbnmr-Ex.R’ failed
The error most likely occurred in:
> ### Name: remove_technical_variation
> ### Title: Remove technical variation from NMR biomarker data in UK
> ### Biobank.
> ### Aliases: remove_technical_variation
>
> ### ** Examples
>
> ukb_data <- ukbnmr::test_data # Toy example dataset for testing package
> processed <- remove_technical_variation(ukb_data)
Checking for revelant UKB fields...
Extracting and pre-processing data...
Checking for required sample processing fields needed for QC procedure...
Processing sample processing fields for QC procedure...
Error in `[.data.table`(sinfo, , `:=`(Spectrometer.Date.Bin, bin_dates(Plate.Measured.Date, :
attempt access index 17/17 in VECTOR_ELT
Calls: remove_technical_variation -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ukbnmr.Rmd’ using rmarkdown
Quitting from ukbnmr.Rmd:115-121 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 17/17 in VECTOR_ELT
---
Backtrace:
▆
1. └─ukbnmr::remove_technical_variation(exported)
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ukbnmr.Rmd' failed with diagnostics:
attempt access index 17/17 in VECTOR_ELT
--- failed re-building ‘ukbnmr.Rmd’
SUMMARY: processing the following file failed:
‘ukbnmr.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc