Last updated on 2026-06-12 04:59:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 122.35 | 85.48 | 207.83 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 85.95 | 66.38 | 152.33 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 178.00 | 150.29 | 328.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 230.00 | 165.62 | 395.62 | ERROR | |
| r-devel-windows-x86_64 | 1.1.0 | 137.00 | 123.00 | 260.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 112.31 | 81.57 | 193.88 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 114.84 | 80.45 | 195.29 | OK | |
| r-release-macos-arm64 | 1.1.0 | 26.00 | 46.00 | 72.00 | OK | |
| r-release-macos-x86_64 | 1.1.0 | 74.00 | 162.00 | 236.00 | OK | |
| r-release-windows-x86_64 | 1.1.0 | 141.00 | 122.00 | 263.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 20.00 | 27.00 | 47.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.0 | 73.00 | 149.00 | 222.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.0 | 153.00 | 154.00 | 307.00 | OK |
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [56s/122s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(slideimp)
>
> test_check("slideimp")
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 3 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
! 10 columns in `obj` have no matching entry in `group` and will be left untouched.
i feature1, feature2, feature3, feature4, feature5, ...
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
! 10 columns in `obj` have no matching entry in `group` and will be left untouched.
i feature1, feature2, feature3, feature4, feature5, ...
Imputing 2 groups using PCA.
Running mode: sequential
! 1 column in `obj` has no matching entry in `group` and will be left untouched.
i e
! 3 columns in `obj` have no matching entry in `group` and will be left untouched.
i d, e, f
! 15 columns in `obj` have no matching entry in `group` and will be left untouched.
i feature6, feature7, feature8, feature9, feature10, ...
Imputing 1 group using KNN.
Running mode: sequential
Saving _problems/test-pca_imp-7.R
Saving _problems/test-pca_imp-116.R
Saving _problems/test-pca_imp-179.R
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
No features in `subset` detected. No imputation was performed.
No columns to impute. Returning input unchanged.
Dropping 1 window(s) covering no `subset` columns.
Step 1/2: Imputing
Processing window 1 of 2
Processing window 2 of 2
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Dropping 1 window(s) covering no `subset` columns.
Step 1/2: Imputing
Processing window 1 of 2
Processing window 2 of 2
Step 2/2: Averaging overlapping regions
Dropping 1 window(s) covering no `subset` columns.
Step 1/2: Imputing
Processing window 1 of 2
Processing window 2 of 2
Step 2/2: Averaging overlapping regions
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `knn_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `pca_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `knn_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
[ FAIL 3 | WARN 24 | SKIP 3 | PASS 496 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• Manual Testing Only (1): 'test-knn_imp.R:82:3'
• empty test (1): 'test-group_imp.R:331:1'
• manual testing with {slideimp.extra} on local machines only (1):
'test-group_imp.R:678:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-pca_imp.R:7:3'): same results as imputePCA ─────────────────────
Error in `if ((criterion < threshold) && (nb.iter > 5)) nb.iter <- 0`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─missMDA::imputePCA(to_test, ncp = 2, nb.init = 1, seed = 1234) at test-pca_imp.R:7:3
2. └─missMDA (local) impute(...)
── Error ('test-pca_imp.R:116:3'): same results as imputePCA, scale = FALSE ────
Error in `if ((criterion < threshold) && (nb.iter > 5)) nb.iter <- 0`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─missMDA::imputePCA(...) at test-pca_imp.R:116:3
2. └─missMDA (local) impute(...)
── Error ('test-pca_imp.R:176:3'): row.w = 'n_miss' matches missMDA::imputePCA with equivalent weights ──
Error in `if ((criterion < threshold) && (nb.iter > 5)) nb.iter <- 0`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─missMDA::imputePCA(...) at test-pca_imp.R:176:3
2. └─missMDA (local) impute(...)
[ FAIL 3 | WARN 24 | SKIP 3 | PASS 496 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [57s/85s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(slideimp)
>
> test_check("slideimp")
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 3 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
Imputing 2 groups using KNN.
Running mode: sequential
! 10 columns in `obj` have no matching entry in `group` and will be left untouched.
i feature1, feature2, feature3, feature4, feature5, ...
Imputing 2 groups using KNN.
Running mode: sequential
Imputing 2 groups using PCA.
Running mode: sequential
! 10 columns in `obj` have no matching entry in `group` and will be left untouched.
i feature1, feature2, feature3, feature4, feature5, ...
Imputing 2 groups using PCA.
Running mode: sequential
! 1 column in `obj` has no matching entry in `group` and will be left untouched.
i e
! 3 columns in `obj` have no matching entry in `group` and will be left untouched.
i d, e, f
! 15 columns in `obj` have no matching entry in `group` and will be left untouched.
i feature6, feature7, feature8, feature9, feature10, ...
Imputing 1 group using KNN.
Running mode: sequential
Saving _problems/test-pca_imp-7.R
Saving _problems/test-pca_imp-116.R
Saving _problems/test-pca_imp-179.R
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
No features in `subset` detected. No imputation was performed.
No columns to impute. Returning input unchanged.
Dropping 1 window(s) covering no `subset` columns.
Step 1/2: Imputing
Processing window 1 of 2
Processing window 2 of 2
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Dropping 1 window(s) covering no `subset` columns.
Step 1/2: Imputing
Processing window 1 of 2
Processing window 2 of 2
Step 2/2: Averaging overlapping regions
Dropping 1 window(s) covering no `subset` columns.
Step 1/2: Imputing
Processing window 1 of 2
Processing window 2 of 2
Step 2/2: Averaging overlapping regions
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `knn_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `pca_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `knn_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning custom function
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Step 1/2: Imputing
Processing window 1 of 3
Processing window 2 of 3
Processing window 3 of 3
Step 2/2: Averaging overlapping regions
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
Tuning `slide_imp()`
Step 1/2: Resolving NA locations
Running mode: sequential
Step 2/2: Tuning
[ FAIL 3 | WARN 24 | SKIP 3 | PASS 496 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• Manual Testing Only (1): 'test-knn_imp.R:82:3'
• empty test (1): 'test-group_imp.R:331:1'
• manual testing with {slideimp.extra} on local machines only (1):
'test-group_imp.R:678:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-pca_imp.R:7:3'): same results as imputePCA ─────────────────────
Error in `if ((criterion < threshold) && (nb.iter > 5)) nb.iter <- 0`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─missMDA::imputePCA(to_test, ncp = 2, nb.init = 1, seed = 1234) at test-pca_imp.R:7:3
2. └─missMDA (local) impute(...)
── Error ('test-pca_imp.R:116:3'): same results as imputePCA, scale = FALSE ────
Error in `if ((criterion < threshold) && (nb.iter > 5)) nb.iter <- 0`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─missMDA::imputePCA(...) at test-pca_imp.R:116:3
2. └─missMDA (local) impute(...)
── Error ('test-pca_imp.R:176:3'): row.w = 'n_miss' matches missMDA::imputePCA with equivalent weights ──
Error in `if ((criterion < threshold) && (nb.iter > 5)) nb.iter <- 0`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─missMDA::imputePCA(...) at test-pca_imp.R:176:3
2. └─missMDA (local) impute(...)
[ FAIL 3 | WARN 24 | SKIP 3 | PASS 496 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc