Last updated on 2025-12-01 19:51:05 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 53.11 | 295.68 | 348.79 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 35.11 | 161.44 | 196.55 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 395.00 | 203.64 | 598.64 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 212.00 | 333.10 | 545.10 | OK | |
| r-devel-windows-x86_64 | 1.0.4 | 72.00 | 286.00 | 358.00 | OK | |
| r-patched-linux-x86_64 | 1.0.4 | 52.51 | 284.38 | 336.89 | OK | |
| r-release-linux-x86_64 | 1.0.4 | 51.22 | 284.87 | 336.09 | OK | |
| r-release-macos-arm64 | 1.0.4 | OK | ||||
| r-release-macos-x86_64 | 1.0.4 | 33.00 | 161.00 | 194.00 | OK | |
| r-release-windows-x86_64 | 1.0.4 | 63.00 | 399.00 | 462.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.4 | 28.00 | 126.00 | 154.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.4 | 82.00 | 377.00 | 459.00 | OK |
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘scITD-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: run_gsea_one_factor
> ### Title: Run gsea separately for all cell types of one specified factor
> ### and plot results
> ### Aliases: run_gsea_one_factor
>
> ### ** Examples
>
> test_container <- run_gsea_one_factor(test_container, factor_select=1,
+ method="fgsea", thresh=0.05, db_use="Hallmark", signed=TRUE)
Warning: The `category` argument of `msigdbr()` is deprecated as of msigdbr 10.0.0.
ℹ Please use the `collection` argument instead.
ℹ The deprecated feature was likely used in the scITD package.
Please report the issue to the authors.
Error in curl::curl_download(url = file_url, destfile = file_path, quiet = verbose, :
HTTP response code said error [zenodo.org]:
The requested URL returned error: 504
Calls: run_gsea_one_factor ... load_msigdb_df -> <Anonymous> -> raise_libcurl_error
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dscore_enr 3.455 0.136 5.24
Flavor: r-devel-linux-x86_64-debian-gcc