Last updated on 2026-07-01 19:57:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.0 | 52.64 | 350.76 | 403.40 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.1 | 37.04 | 277.62 | 314.66 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.0.1 | 80.00 | 608.33 | 688.33 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 3.0.1 | 95.00 | 712.77 | 807.77 | OK | |
| r-devel-windows-x86_64 | 3.0.1 | 56.00 | 431.00 | 487.00 | ERROR | |
| r-patched-linux-x86_64 | 3.0.0 | 48.96 | 328.16 | 377.12 | OK | |
| r-release-linux-x86_64 | 3.0.0 | OK | ||||
| r-release-macos-arm64 | 3.0.1 | 13.00 | 100.00 | 113.00 | OK | |
| r-release-macos-x86_64 | 3.0.1 | 33.00 | 340.00 | 373.00 | OK | |
| r-release-windows-x86_64 | 3.0.1 | 53.00 | 424.00 | 477.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.1 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 3.0.1 | 33.00 | 630.00 | 663.00 | OK | |
| r-oldrel-windows-x86_64 | 3.0.1 | 49.00 | 449.00 | 498.00 | ERROR |
Version: 3.0.1
Check: tests
Result: ERROR
Running ‘testthat-active-snw.R’ [15s/26s]
Running ‘testthat-clustering.R’ [11s/17s]
Running ‘testthat-comparison.R’ [8s/12s]
Running ‘testthat-cpp.R’
Running ‘testthat-data_generation.R’ [7s/13s]
Running ‘testthat-enrichment.R’ [50s/74s]
Running ‘testthat-run-pathfindr.R’
Running ‘testthat-scoring.R’ [8s/12s]
Running ‘testthat-search-and-enrichment-wrapper.R’ [8s/20s]
Running ‘testthat-utility.R’ [24s/37s]
Running ‘testthat-visualization.R’ [117s/155s]
Running the tests in ‘tests/testthat-enrichment.R’ failed.
Complete output:
> library(testthat)
> library(pathfindR)
Loading required package: pathfindR.data
>
> test_check("pathfindR", filter = "enrichment")
Saving _problems/test-enrichment-177.R
Saving _problems/test-enrichment-182.R
Saving _problems/test-enrichment-188.R
Saving _problems/test-enrichment-189.R
Saving _problems/test-enrichment-204.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 119 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-enrichment.R:174:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `enr_res1 <- ...` to inherit from "character".
Actual inheritance: "NULL"
── Failure ('test-enrichment.R:182:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `nrow(enr_res1) <= total` to be TRUE.
Differences:
`actual`:
`expected`: TRUE
── Failure ('test-enrichment.R:185:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `enr_res2 <- ...` to inherit from "character".
Actual inheritance: "NULL"
── Failure ('test-enrichment.R:189:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `ncol(enr_res2) == ncol(enr_res1) + 1` to be TRUE.
Differences:
`actual`:
`expected`: TRUE
── Error ('test-enrichment.R:201:3'): `summarize_enrichment_results()` -- returns summarized enrichment results ──
Error in `summarize_enrichment_results(enrichment_res = combined_res[, -6])`: `enrichment_res` should be a data frame
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-enrichment.R:201:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─pathfindR::summarize_enrichment_results(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 119 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.0.1
Check: tests
Result: ERROR
Running 'testthat-active-snw.R' [12s]
Running 'testthat-clustering.R' [6s]
Running 'testthat-comparison.R' [5s]
Running 'testthat-cpp.R' [4s]
Running 'testthat-data_generation.R' [4s]
Running 'testthat-enrichment.R' [38s]
Running 'testthat-run-pathfindr.R' [4s]
Running 'testthat-scoring.R' [5s]
Running 'testthat-search-and-enrichment-wrapper.R' [9s]
Running 'testthat-utility.R' [14s]
Running 'testthat-visualization.R' [89s]
Running the tests in 'tests/testthat-enrichment.R' failed.
Complete output:
> library(testthat)
> library(pathfindR)
Loading required package: pathfindR.data
>
> test_check("pathfindR", filter = "enrichment")
Saving _problems/test-enrichment-177.R
Saving _problems/test-enrichment-182.R
Saving _problems/test-enrichment-188.R
Saving _problems/test-enrichment-189.R
Saving _problems/test-enrichment-204.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 119 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-enrichment.R:174:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `enr_res1 <- ...` to inherit from "character".
Actual inheritance: "NULL"
── Failure ('test-enrichment.R:182:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `nrow(enr_res1) <= total` to be TRUE.
Differences:
`actual`:
`expected`: TRUE
── Failure ('test-enrichment.R:185:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `enr_res2 <- ...` to inherit from "character".
Actual inheritance: "NULL"
── Failure ('test-enrichment.R:189:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `ncol(enr_res2) == ncol(enr_res1) + 1` to be TRUE.
Differences:
`actual`:
`expected`: TRUE
── Error ('test-enrichment.R:201:3'): `summarize_enrichment_results()` -- returns summarized enrichment results ──
Error in `summarize_enrichment_results(enrichment_res = combined_res[, -6])`: `enrichment_res` should be a data frame
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-enrichment.R:201:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─pathfindR::summarize_enrichment_results(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 119 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 3.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggkegg’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 3.0.1
Check: tests
Result: ERROR
Running 'testthat-active-snw.R' [12s]
Running 'testthat-clustering.R' [8s]
Running 'testthat-comparison.R' [4s]
Running 'testthat-cpp.R' [4s]
Running 'testthat-data_generation.R' [4s]
Running 'testthat-enrichment.R' [35s]
Running 'testthat-run-pathfindr.R' [4s]
Running 'testthat-scoring.R' [5s]
Running 'testthat-search-and-enrichment-wrapper.R' [8s]
Running 'testthat-utility.R' [13s]
Running 'testthat-visualization.R' [86s]
Running the tests in 'tests/testthat-enrichment.R' failed.
Complete output:
> library(testthat)
> library(pathfindR)
Loading required package: pathfindR.data
>
> test_check("pathfindR", filter = "enrichment")
Saving _problems/test-enrichment-177.R
Saving _problems/test-enrichment-182.R
Saving _problems/test-enrichment-188.R
Saving _problems/test-enrichment-189.R
Saving _problems/test-enrichment-204.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 119 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-enrichment.R:174:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `enr_res1 <- ...` to inherit from "character".
Actual inheritance: "NULL"
── Failure ('test-enrichment.R:182:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `nrow(enr_res1) <= total` to be TRUE.
Differences:
`actual`:
`expected`: TRUE
── Failure ('test-enrichment.R:185:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `enr_res2 <- ...` to inherit from "character".
Actual inheritance: "NULL"
── Failure ('test-enrichment.R:189:3'): `enrichment_analyses()` -- returns a data frame ──
Expected `ncol(enr_res2) == ncol(enr_res1) + 1` to be TRUE.
Differences:
`actual`:
`expected`: TRUE
── Error ('test-enrichment.R:201:3'): `summarize_enrichment_results()` -- returns summarized enrichment results ──
Error in `summarize_enrichment_results(enrichment_res = combined_res[, -6])`: `enrichment_res` should be a data frame
Backtrace:
▆
1. ├─testthat::expect_is(...) at test-enrichment.R:201:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─pathfindR::summarize_enrichment_results(...)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 119 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64