Last updated on 2025-12-20 09:49:55 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.28.3 | 29.78 | 410.49 | 440.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.28.3 | 19.12 | 252.74 | 271.86 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.28.3 | 58.00 | 673.29 | 731.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.28.3 | 29.00 | 346.27 | 375.27 | ERROR | |
| r-devel-windows-x86_64 | 0.28.3 | 31.00 | 332.00 | 363.00 | OK | |
| r-patched-linux-x86_64 | 0.28.3 | 33.16 | 379.60 | 412.76 | OK | |
| r-release-linux-x86_64 | 0.28.3 | 29.74 | 381.41 | 411.15 | OK | |
| r-release-macos-arm64 | 0.28.3 | 8.00 | 105.00 | 113.00 | OK | |
| r-release-macos-x86_64 | 0.28.3 | 24.00 | 515.00 | 539.00 | OK | |
| r-release-windows-x86_64 | 0.28.3 | 32.00 | 326.00 | 358.00 | OK | |
| r-oldrel-macos-arm64 | 0.28.3 | 9.00 | 101.00 | 110.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.28.3 | 26.00 | 801.00 | 827.00 | OK | |
| r-oldrel-windows-x86_64 | 0.28.3 | 45.00 | 422.00 | 467.00 | NOTE |
Version: 0.28.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [93s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(parameters)
> library(testthat)
>
> test_check("parameters")
Starting 2 test processes.
> test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and
> test-include_reference.R: `?performance::check_singularity`).
> test-include_reference.R: Some of the confidence intervals of the random effects parameters are
> test-include_reference.R: probably not meaningful!
> test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.
> test-include_reference.R: using the glmmTMB package.
> test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and
> test-include_reference.R: `?performance::check_singularity`).
> test-include_reference.R: Some of the confidence intervals of the random effects parameters are
> test-include_reference.R: probably not meaningful!
> test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.
> test-include_reference.R: using the glmmTMB package.
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: treatment, gender
Saving _problems/test-marginaleffects-11.R
Saving _problems/test-marginaleffects-94.R
Saving _problems/test-marginaleffects-130.R
Saving _problems/test-marginaleffects-153.R
> test-n_factors.R: [1] "# Method Agreement Procedure:"
> test-n_factors.R: [2] ""
> test-n_factors.R: [3] "The choice of 1 dimensions is supported by 11 (84.62%) methods out of 13 (Bartlett, Anderson, Lawley, Optimal coordinates, Acceleration factor, Parallel analysis, Kaiser criterion, Scree (SE), Scree (R2), VSS complexity 1, Velicer's MAP)."
> test-n_factors.R: [1] "# Method Agreement Procedure:"
> test-n_factors.R: [2] ""
> test-n_factors.R: [3] "The choice of 1 dimensions is supported by 3 (60.00%) methods out of 5 (Velicer's MAP, BIC, BIC (adjusted))."
[ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]
══ Skipped tests (129) ═════════════════════════════════════════════════════════
• On CRAN (120): 'test-GLMMadaptive.R:1:1', 'test-Hmisc.R:1:1',
'test-averaging.R:1:1', 'test-backticks.R:1:1',
'test-bootstrap_emmeans.R:1:1', 'test-bootstrap_parameters.R:1:1',
'test-brms.R:1:1', 'test-compare_parameters.R:90:5',
'test-compare_parameters.R:95:5', 'test-complete_separation.R:4:1',
'test-complete_separation.R:18:1', 'test-complete_separation.R:28:1',
'test-coxph.R:69:1', 'test-efa.R:1:1', 'test-emmGrid-df_colname.R:1:1',
'test-equivalence_test.R:3:1', 'test-equivalence_test.R:13:1',
'test-equivalence_test.R:22:3', 'test-equivalence_test.R:112:3',
'test-factor_analysis.R:2:3', 'test-factor_analysis.R:124:3',
'test-format_model_parameters2.R:2:3', 'test-gam.R:30:1',
'test-get_scores.R:1:1', 'test-glmer.R:1:1', 'test-glmmTMB-2.R:1:1',
'test-glmmTMB-profile_CI.R:2:3', 'test-glmmTMB.R:1:1',
'test-group_level_total.R:2:1', 'test-helper.R:1:1', 'test-ivreg.R:45:1',
'test-lcmm.R:1:1', 'test-lmerTest.R:1:1', 'test-include_reference.R:4:1',
'test-include_reference.R:62:1', 'test-include_reference.R:110:1',
'test-mipo.R:5:1', 'test-mipo.R:23:1', 'test-mmrm.R:1:1',
'test-model_parameters.anova.R:1:1', 'test-model_parameters.aov.R:1:1',
'test-model_parameters.aov_es_ci.R:183:3',
'test-model_parameters.aov_es_ci.R:294:3',
'test-model_parameters.aov_es_ci.R:344:3',
'test-model_parameters.aov_es_ci.R:397:3',
'test-model_parameters.bracl.R:1:1', 'test-model_parameters.cgam.R:1:1',
'test-model_parameters.coxme.R:1:1', 'test-marginaleffects.R:170:1',
'test-marginaleffects.R:199:3', 'test-model_parameters.epi2x2.R:1:1',
'test-model_parameters.efa_cfa.R:30:3',
'test-model_parameters.fixest_multi.R:1:1',
'test-model_parameters.fixest.R:2:3', 'test-model_parameters.fixest.R:77:3',
'test-model_parameters.fixest.R:145:1', 'test-model_parameters.glmgee.R:1:1',
'test-model_parameters.logistf.R:1:1', 'test-model_parameters.logitr.R:1:1',
'test-model_parameters.mclogit.R:1:1', 'test-model_parameters.mediate.R:1:1',
'test-model_parameters.glm.R:35:1', 'test-model_parameters.glm.R:67:1',
'test-model_parameters.mixed.R:2:1', 'test-model_parameters.nnet.R:5:1',
'test-model_parameters_df.R:1:1', 'test-model_parameters.vgam.R:3:1',
'test-model_parameters_ordinal.R:1:1',
'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1',
'test-model_parameters_std_mixed.R:1:1', 'test-n_factors.R:10:3',
'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1',
'test-p_direction.R:1:1', 'test-p_significance.R:1:1', 'test-p_value.R:14:1',
'test-panelr.R:1:1', 'test-pipe.R:1:1', 'test-pca.R:64:1', 'test-polr.R:1:1',
'test-plm.R:97:1', 'test-posterior.R:1:1', 'test-pool_parameters.R:1:1',
'test-pool_parameters.R:32:1', 'test-print_AER_labels.R:5:1',
'test-printing-stan.R:1:1', 'test-printing.R:1:1',
'test-pretty_names.R:40:1', 'test-pretty_names.R:73:5',
'test-quantreg.R:1:1', 'test-random_effects_ci-glmmTMB.R:3:1',
'test-random_effects_ci.R:1:1', 'test-robust.R:1:1', 'test-rstanarm.R:2:1',
'test-sampleSelection.R:2:1', 'test-printing2.R:14:5',
'test-printing2.R:21:5', 'test-printing2.R:26:5', 'test-printing2.R:31:5',
'test-printing2.R:36:5', 'test-printing2.R:48:5', 'test-printing2.R:91:7',
'test-printing2.R:126:5', 'test-serp.R:5:1', 'test-svylme.R:1:1',
'test-svyolr.R:1:1', 'test-visualisation_recipe.R:1:1',
'test-weightit.R:6:1', 'test-weightit.R:26:1', 'test-wrs2.R:55:1',
'test-standardize_parameters.R:28:1', 'test-standardize_parameters.R:36:3',
'test-standardize_parameters.R:61:3', 'test-standardize_parameters.R:173:3',
'test-standardize_parameters.R:297:3', 'test-standardize_parameters.R:332:3',
'test-standardize_parameters.R:425:3', 'test-standardize_parameters.R:515:3'
• On Linux (4): 'test-model_parameters.BFBayesFactor.R:1:1',
'test-nestedLogit.R:78:3', 'test-simulate_model.R:1:1',
'test-simulate_parameters.R:1:1'
• TODO: check this test locally, fails on CI, probably due to scoping issues?
(1): 'test-marginaleffects.R:280:3'
• TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3'
• TODO: this one actually is not correct. (1):
'test-model_parameters_robust.R:127:3'
• empty test (2): 'test-wrs2.R:69:1', 'test-wrs2.R:81:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-marginaleffects.R:7:3'): marginaleffects() ─────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:90:3'): comparisons() ────────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:127:3'): slopes() ────────────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:148:3'): multiple contrasts: Issue #779 ──────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 13/13 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-marginaleffects.R:148:3
2. │ └─base::withCallingHandlers(...)
3. └─marginaleffects::comparisons(...)
4. ├─base::do.call("get_comparisons", args)
5. └─marginaleffects:::get_comparisons(...)
6. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
7. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.28.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [263s/239s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(parameters)
> library(testthat)
>
> test_check("parameters")
Starting 2 test processes.
> test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and
> test-include_reference.R: `?performance::check_singularity`).
> test-include_reference.R: Some of the confiden
> test-include_reference.R: ce intervals of the random effects parameters are
> test-include_reference.R: probably not meaningful!
> test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.
> test-include_reference.R: using the glmmTMB package.
> test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and
> test-include_reference.R: `?performance::check_singularity`).
> test-include_reference.R: Some of the confidence intervals of the random effects parameters are
> test-include_reference.R: probably not meaningful!
> test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.
> test-include_reference.R: using the glmmTMB package.
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: treatment, gender
Saving _problems/test-marginaleffects-11.R
Saving _problems/test-marginaleffects-94.R
Saving _problems/test-marginaleffects-130.R
Saving _problems/test-marginaleffects-153.R
> test-n_factors.R: [1] "# Method Agreement Procedure:"
> test-n_factors.R: [2] ""
> test-n_factors.R: [3] "The choice of 1 dimensions is supported by 11 (84.62%) methods out of 13 (Bartlett, Anderson, Lawley, Optimal coordinates, Acceleration factor, Parallel analysis, Kaiser criterion, Scree (SE), Scree (R2), VSS complexity 1, Velicer's MAP)."
> test-n_factors.R: [1] "# Method Agreement Procedure:"
> test-n_factors.R: [2] ""
> test-n_factors.R: [3] "The choice of 1 dimensions is supported by 3 (60.00%) methods out of 5 (Velicer's MAP, BIC, BIC (adjusted))."
[ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]
══ Skipped tests (129) ═════════════════════════════════════════════════════════
• On CRAN (120): 'test-GLMMadaptive.R:1:1', 'test-Hmisc.R:1:1',
'test-averaging.R:1:1', 'test-backticks.R:1:1',
'test-bootstrap_emmeans.R:1:1', 'test-bootstrap_parameters.R:1:1',
'test-brms.R:1:1', 'test-compare_parameters.R:90:5',
'test-compare_parameters.R:95:5', 'test-complete_separation.R:4:1',
'test-complete_separation.R:18:1', 'test-complete_separation.R:28:1',
'test-coxph.R:69:1', 'test-efa.R:1:1', 'test-emmGrid-df_colname.R:1:1',
'test-equivalence_test.R:3:1', 'test-equivalence_test.R:13:1',
'test-equivalence_test.R:22:3', 'test-equivalence_test.R:112:3',
'test-factor_analysis.R:2:3', 'test-factor_analysis.R:124:3',
'test-format_model_parameters2.R:2:3', 'test-gam.R:30:1',
'test-get_scores.R:1:1', 'test-glmer.R:1:1', 'test-glmmTMB-2.R:1:1',
'test-glmmTMB-profile_CI.R:2:3', 'test-glmmTMB.R:1:1',
'test-group_level_total.R:2:1', 'test-helper.R:1:1', 'test-ivreg.R:45:1',
'test-lcmm.R:1:1', 'test-lmerTest.R:1:1', 'test-include_reference.R:4:1',
'test-include_reference.R:62:1', 'test-include_reference.R:110:1',
'test-mipo.R:5:1', 'test-mipo.R:23:1', 'test-mmrm.R:1:1',
'test-model_parameters.anova.R:1:1', 'test-model_parameters.aov.R:1:1',
'test-model_parameters.aov_es_ci.R:183:3',
'test-model_parameters.aov_es_ci.R:294:3',
'test-model_parameters.aov_es_ci.R:344:3',
'test-model_parameters.aov_es_ci.R:397:3', 'test-marginaleffects.R:170:1',
'test-marginaleffects.R:199:3', 'test-model_parameters.bracl.R:1:1',
'test-model_parameters.cgam.R:1:1', 'test-model_parameters.coxme.R:1:1',
'test-model_parameters.epi2x2.R:1:1', 'test-model_parameters.efa_cfa.R:30:3',
'test-model_parameters.fixest_multi.R:1:1',
'test-model_parameters.fixest.R:2:3', 'test-model_parameters.fixest.R:77:3',
'test-model_parameters.fixest.R:145:1', 'test-model_parameters.glmgee.R:1:1',
'test-model_parameters.logistf.R:1:1', 'test-model_parameters.logitr.R:1:1',
'test-model_parameters.glm.R:35:1', 'test-model_parameters.glm.R:67:1',
'test-model_parameters.mclogit.R:1:1', 'test-model_parameters.mediate.R:1:1',
'test-model_parameters.mixed.R:2:1', 'test-model_parameters.nnet.R:5:1',
'test-model_parameters.vgam.R:3:1', 'test-model_parameters_df.R:1:1',
'test-model_parameters_ordinal.R:1:1',
'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1',
'test-model_parameters_std_mixed.R:1:1', 'test-n_factors.R:10:3',
'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1',
'test-p_direction.R:1:1', 'test-p_significance.R:1:1', 'test-p_value.R:14:1',
'test-panelr.R:1:1', 'test-pipe.R:1:1', 'test-pca.R:64:1', 'test-polr.R:1:1',
'test-plm.R:97:1', 'test-posterior.R:1:1', 'test-pool_parameters.R:1:1',
'test-pool_parameters.R:32:1', 'test-print_AER_labels.R:5:1',
'test-printing-stan.R:1:1', 'test-printing.R:1:1',
'test-pretty_names.R:40:1', 'test-pretty_names.R:73:5',
'test-quantreg.R:1:1', 'test-random_effects_ci-glmmTMB.R:3:1',
'test-random_effects_ci.R:1:1', 'test-robust.R:1:1', 'test-rstanarm.R:2:1',
'test-sampleSelection.R:2:1', 'test-serp.R:5:1', 'test-printing2.R:14:5',
'test-printing2.R:21:5', 'test-printing2.R:26:5', 'test-printing2.R:31:5',
'test-printing2.R:36:5', 'test-printing2.R:48:5', 'test-printing2.R:91:7',
'test-printing2.R:126:5', 'test-svylme.R:1:1', 'test-svyolr.R:1:1',
'test-visualisation_recipe.R:1:1', 'test-weightit.R:6:1',
'test-weightit.R:26:1', 'test-wrs2.R:55:1',
'test-standardize_parameters.R:28:1', 'test-standardize_parameters.R:36:3',
'test-standardize_parameters.R:61:3', 'test-standardize_parameters.R:173:3',
'test-standardize_parameters.R:297:3', 'test-standardize_parameters.R:332:3',
'test-standardize_parameters.R:425:3', 'test-standardize_parameters.R:515:3'
• On Linux (4): 'test-model_parameters.BFBayesFactor.R:1:1',
'test-nestedLogit.R:78:3', 'test-simulate_model.R:1:1',
'test-simulate_parameters.R:1:1'
• TODO: check this test locally, fails on CI, probably due to scoping issues?
(1): 'test-marginaleffects.R:280:3'
• TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3'
• TODO: this one actually is not correct. (1):
'test-model_parameters_robust.R:127:3'
• empty test (2): 'test-wrs2.R:69:1', 'test-wrs2.R:81:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-marginaleffects.R:7:3'): marginaleffects() ─────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:90:3'): comparisons() ────────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:127:3'): slopes() ────────────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:148:3'): multiple contrasts: Issue #779 ──────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 13/13 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-marginaleffects.R:148:3
2. │ └─base::withCallingHandlers(...)
3. └─marginaleffects::comparisons(...)
4. ├─base::do.call("get_comparisons", args)
5. └─marginaleffects:::get_comparisons(...)
6. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
7. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.28.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [137s/71s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(parameters)
> library(testthat)
>
> test_check("parameters")
Starting 2 test processes.
> test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and
> test-include_reference.R: `?performance::check_singularity`).
> test-include_reference.R: Some of the confidence intervals of the random effects parameters are
> test-include_reference.R: probably not meaningful!
> test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.
> test-include_reference.R: using the glmmTMB package.
> test-include_reference.R: Your model may suffer from singularity (see `?lme4::isSingular` and
> test-include_reference.R: `?performance::check_singularity`).
> test-include_reference.R: Some of the confidence intervals of the random effects parameters are
> test-include_reference.R: probably not meaningful!
> test-include_reference.R: You may try to impose a prior on the random effects parameters, e.g.
> test-include_reference.R: using the glmmTMB package.
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: condition, talk
> test-model_parameters.afex_aov.R: Contrasts set to contr.sum for the following variables: treatment, gender
Saving _problems/test-marginaleffects-11.R
Saving _problems/test-marginaleffects-94.R
Saving _problems/test-marginaleffects-130.R
Saving _problems/test-marginaleffects-153.R
> test-n_factors.R: [1] "# Method Agreement Procedure:"
> test-n_factors.R: [2] ""
> test-n_factors.R: [3] "The choice of 1 dimensions is supported by 11 (84.62%) methods out of 13 (Bartlett, Anderson, Lawley, Optimal coordinates, Acceleration factor, Parallel analysis, Kaiser criterion, Scree (SE), Scree (R2), VSS complexity 1, Velicer's MAP)."
> test-n_factors.R: [1] "# Method Agreement Procedure:"
> test-n_factors.R: [2] ""
> test-n_factors.R: [3] "The choice of 1 dimensions is supported by 3 (60.00%) methods out of 5 (Velicer's MAP, BIC, BIC (adjusted))."
[ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]
══ Skipped tests (129) ═════════════════════════════════════════════════════════
• On CRAN (120): 'test-GLMMadaptive.R:1:1', 'test-Hmisc.R:1:1',
'test-averaging.R:1:1', 'test-backticks.R:1:1',
'test-bootstrap_emmeans.R:1:1', 'test-bootstrap_parameters.R:1:1',
'test-brms.R:1:1', 'test-compare_parameters.R:90:5',
'test-compare_parameters.R:95:5', 'test-complete_separation.R:4:1',
'test-complete_separation.R:18:1', 'test-complete_separation.R:28:1',
'test-coxph.R:69:1', 'test-efa.R:1:1', 'test-emmGrid-df_colname.R:1:1',
'test-equivalence_test.R:3:1', 'test-equivalence_test.R:13:1',
'test-equivalence_test.R:22:3', 'test-equivalence_test.R:112:3',
'test-factor_analysis.R:2:3', 'test-factor_analysis.R:124:3',
'test-format_model_parameters2.R:2:3', 'test-gam.R:30:1',
'test-get_scores.R:1:1', 'test-glmer.R:1:1', 'test-glmmTMB-2.R:1:1',
'test-glmmTMB-profile_CI.R:2:3', 'test-glmmTMB.R:1:1',
'test-group_level_total.R:2:1', 'test-helper.R:1:1', 'test-ivreg.R:45:1',
'test-lcmm.R:1:1', 'test-lmerTest.R:1:1', 'test-include_reference.R:4:1',
'test-include_reference.R:62:1', 'test-include_reference.R:110:1',
'test-mipo.R:5:1', 'test-mipo.R:23:1', 'test-mmrm.R:1:1',
'test-model_parameters.anova.R:1:1', 'test-model_parameters.aov.R:1:1',
'test-marginaleffects.R:170:1', 'test-marginaleffects.R:199:3',
'test-model_parameters.bracl.R:1:1', 'test-model_parameters.cgam.R:1:1',
'test-model_parameters.aov_es_ci.R:183:3',
'test-model_parameters.aov_es_ci.R:294:3',
'test-model_parameters.aov_es_ci.R:344:3',
'test-model_parameters.aov_es_ci.R:397:3',
'test-model_parameters.coxme.R:1:1', 'test-model_parameters.epi2x2.R:1:1',
'test-model_parameters.efa_cfa.R:30:3',
'test-model_parameters.fixest_multi.R:1:1',
'test-model_parameters.fixest.R:2:3', 'test-model_parameters.fixest.R:77:3',
'test-model_parameters.fixest.R:145:1', 'test-model_parameters.glmgee.R:1:1',
'test-model_parameters.logistf.R:1:1', 'test-model_parameters.logitr.R:1:1',
'test-model_parameters.mclogit.R:1:1', 'test-model_parameters.mediate.R:1:1',
'test-model_parameters.glm.R:35:1', 'test-model_parameters.glm.R:67:1',
'test-model_parameters.mixed.R:2:1', 'test-model_parameters.nnet.R:5:1',
'test-model_parameters_df.R:1:1', 'test-model_parameters.vgam.R:3:1',
'test-model_parameters_ordinal.R:1:1',
'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1',
'test-model_parameters_std_mixed.R:1:1', 'test-n_factors.R:10:3',
'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1',
'test-p_direction.R:1:1', 'test-p_significance.R:1:1', 'test-p_value.R:14:1',
'test-panelr.R:1:1', 'test-pipe.R:1:1', 'test-pca.R:64:1', 'test-polr.R:1:1',
'test-plm.R:97:1', 'test-posterior.R:1:1', 'test-pool_parameters.R:1:1',
'test-pool_parameters.R:32:1', 'test-print_AER_labels.R:5:1',
'test-printing-stan.R:1:1', 'test-printing.R:1:1', 'test-printing2.R:14:5',
'test-printing2.R:21:5', 'test-printing2.R:26:5', 'test-printing2.R:31:5',
'test-printing2.R:36:5', 'test-printing2.R:48:5', 'test-printing2.R:91:7',
'test-printing2.R:126:5', 'test-quantreg.R:1:1',
'test-random_effects_ci-glmmTMB.R:3:1', 'test-random_effects_ci.R:1:1',
'test-robust.R:1:1', 'test-rstanarm.R:2:1', 'test-sampleSelection.R:2:1',
'test-serp.R:5:1', 'test-pretty_names.R:40:1', 'test-pretty_names.R:73:5',
'test-svylme.R:1:1', 'test-svyolr.R:1:1', 'test-visualisation_recipe.R:1:1',
'test-weightit.R:6:1', 'test-weightit.R:26:1', 'test-wrs2.R:55:1',
'test-standardize_parameters.R:28:1', 'test-standardize_parameters.R:36:3',
'test-standardize_parameters.R:61:3', 'test-standardize_parameters.R:173:3',
'test-standardize_parameters.R:297:3', 'test-standardize_parameters.R:332:3',
'test-standardize_parameters.R:425:3', 'test-standardize_parameters.R:515:3'
• On Linux (4): 'test-model_parameters.BFBayesFactor.R:1:1',
'test-nestedLogit.R:78:3', 'test-simulate_model.R:1:1',
'test-simulate_parameters.R:1:1'
• TODO: check this test locally, fails on CI, probably due to scoping issues?
(1): 'test-marginaleffects.R:280:3'
• TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3'
• TODO: this one actually is not correct. (1):
'test-model_parameters_robust.R:127:3'
• empty test (2): 'test-wrs2.R:69:1', 'test-wrs2.R:81:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-marginaleffects.R:7:3'): marginaleffects() ─────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:90:3'): comparisons() ────────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:127:3'): slopes() ────────────────────────────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. └─marginaleffects::comparisons(...)
2. ├─base::do.call("get_comparisons", args)
3. └─marginaleffects:::get_comparisons(...)
4. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
5. └─data.table:::`[.data.table`(...)
── Error ('test-marginaleffects.R:148:3'): multiple contrasts: Issue #779 ──────
Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 13/13 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-marginaleffects.R:148:3
2. │ └─base::withCallingHandlers(...)
3. └─marginaleffects::comparisons(...)
4. ├─base::do.call("get_comparisons", args)
5. └─marginaleffects:::get_comparisons(...)
6. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp]
7. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 129 | PASS 695 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.28.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘M3C’
Flavor: r-oldrel-macos-arm64
Version: 0.28.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'EGAnet'
Flavor: r-oldrel-windows-x86_64