Last updated on 2025-12-23 03:49:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.26 | 243.16 | 256.42 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.40 | 196.26 | 206.66 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 25.00 | 289.70 | 314.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 29.00 | 402.64 | 431.64 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 22.00 | 186.00 | 208.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.29 | 246.27 | 261.56 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 13.77 | 256.04 | 269.81 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 12.00 | 339.00 | 351.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 187.00 | 208.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 11.00 | 324.00 | 335.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 26.00 | 235.00 | 261.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [97s/218s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.813, system: 0.120, elapsed: 4.697 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.134, system: 0.293, elapsed: 21.637 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.211, system: 0.034, elapsed: 0.672 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.285, system: 0.386, elapsed: 9.799 seconds]
Computing values for grid cells...
... done. [user: 0.202, system: 0.019, elapsed: 0.490 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.338, system: 1.205, elapsed: 39.657 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.734, system: 0.087, elapsed: 3.468 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.451, system: 0.427, elapsed: 21.678 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.033, elapsed: 0.459 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.365, system: 0.394, elapsed: 12.124 seconds]
Computing values for grid cells...
... done. [user: 0.193, system: 0.016, elapsed: 0.527 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.620, system: 1.323, elapsed: 40.162 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.615, system: 0.062, elapsed: 3.894 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.526, system: 0.377, elapsed: 25.751 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.032, elapsed: 0.616 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.339, system: 0.499, elapsed: 14.280 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.011, elapsed: 0.377 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.340, system: 0.356, elapsed: 2.336 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.010, system: 1.881, elapsed: 50.640 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.616, system: 0.106, elapsed: 3.276 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.599, system: 0.503, elapsed: 26.422 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.038, elapsed: 0.573 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.380, system: 0.430, elapsed: 9.810 seconds]
Computing values for grid cells...
... done. [user: 0.202, system: 0.013, elapsed: 0.526 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.641, system: 1.204, elapsed: 29.909 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 29.457, system: 2.728, elapsed: 73.032 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [94s/238s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.882, system: 0.128, elapsed: 4.993 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.878, system: 0.303, elapsed: 25.227 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.025, elapsed: 0.654 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.057, system: 0.388, elapsed: 11.916 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.012, elapsed: 0.486 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.919, system: 1.328, elapsed: 46.622 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.688, system: 0.072, elapsed: 4.631 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.007, system: 0.344, elapsed: 26.659 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.038, elapsed: 0.655 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.172, system: 0.380, elapsed: 11.675 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.019, elapsed: 0.770 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.949, system: 1.250, elapsed: 46.988 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.735, system: 0.094, elapsed: 5.900 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.091, system: 0.385, elapsed: 27.990 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.038, elapsed: 0.731 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.023, system: 0.441, elapsed: 10.797 seconds]
Computing values for grid cells...
... done. [user: 0.198, system: 0.021, elapsed: 0.521 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.231, system: 0.400, elapsed: 2.388 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.327, system: 1.845, elapsed: 51.715 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.693, system: 0.065, elapsed: 4.545 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.110, system: 0.307, elapsed: 26.171 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.042, elapsed: 0.696 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.081, system: 0.398, elapsed: 11.615 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.027, elapsed: 0.585 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.532, system: 1.016, elapsed: 30.515 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 28.651, system: 2.209, elapsed: 77.429 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64