Last updated on 2026-05-03 19:51:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.1 | 15.17 | 336.13 | 351.30 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.3.1 | 10.13 | 225.14 | 235.27 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.3.1 | 24.00 | 534.78 | 558.78 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.3.1 | 22.00 | 523.69 | 545.69 | OK | |
| r-devel-windows-x86_64 | 2.3.1 | 21.00 | 367.00 | 388.00 | OK | |
| r-patched-linux-x86_64 | 2.3.1 | 14.46 | 314.45 | 328.91 | OK | |
| r-release-linux-x86_64 | 2.3.1 | 13.17 | 255.88 | 269.05 | ERROR | |
| r-release-macos-arm64 | 2.3.1 | 4.00 | 85.00 | 89.00 | OK | |
| r-release-macos-x86_64 | 2.3.1 | 10.00 | 336.00 | 346.00 | OK | |
| r-release-windows-x86_64 | 2.3.1 | 17.00 | 330.00 | 347.00 | OK | |
| r-oldrel-macos-arm64 | 2.3.1 | 4.00 | 99.00 | 103.00 | OK | |
| r-oldrel-macos-x86_64 | 2.3.1 | 11.00 | 500.00 | 511.00 | OK | |
| r-oldrel-windows-x86_64 | 2.3.1 | 23.00 | 449.00 | 472.00 | OK |
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [60s/73s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(deeptime)
>
> test_check("deeptime")
viewport[GRID.VP.403]
viewport[GRID.VP.554]
Saving _problems/test-guides-194.R
Saving _problems/test-guides-210.R
NULL
NULL
NULL
[ FAIL 2 | WARN 0 | SKIP 37 | PASS 131 ]
══ Skipped tests (37) ══════════════════════════════════════════════════════════
• On CRAN (27): 'test-coord_geo.R:55:1', 'test-coord_geo.R:80:3',
'test-coord_geo.R:102:1', 'test-coord_geo.R:117:1', 'test-coord_geo.R:132:1',
'test-coord_geo.R:153:1', 'test-coord_trans_flip.R:1:1',
'test-coord_trans_xy.R:1:1', 'test-disparity_through_time.R:1:1',
'test-facet_color.R:1:1', 'test-facet_color.R:78:1',
'test-facet_color.R:121:1', 'test-facet_color.R:167:1',
'test-get_scale_data.R:14:3', 'test-guides.R:1:1', 'test-guides.R:73:1',
'test-guides.R:88:1', 'test-guides.R:103:1', 'test-guides.R:125:1',
'test-patterns.R:42:1', 'test-patterns.R:55:1', 'test-patterns.R:76:1',
'test-phylomorpho.R:1:1', 'test-points_range.R:1:1', 'test-scales.R:1:1',
'test-scales.R:14:1', 'test-scales.R:27:1'
• R.Version()$os != "mingw32" is TRUE (2): 'test-patterns.R:9:3',
'test-patterns.R:99:3'
• {ggtree} is not installed (8): 'test-coord_geo.R:171:3',
'test-coord_geo.R:183:3', 'test-coord_geo_polar.R:1:1',
'test-coord_geo_radial.R:1:1', 'test-geom_text_phylo.R:3:3',
'test-ggarrange2.R:25:3', 'test-guides.R:149:3', 'test-guides.R:163:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-guides.R:184:3'): guide_geo works with coord_geo_radial ────────
Error in `revts(ggtree(tree))`: could not find function "revts"
── Error ('test-guides.R:200:3'): ggtree scale works with only fossil taxa ─────
Error in `ggtree(ceratopsianTreeRaia, position = position_nudge(x = -ceratopsianTreeRaia$root.time))`: could not find function "ggtree"
[ FAIL 2 | WARN 0 | SKIP 37 | PASS 131 ]
Deleting unused snapshots: 'coord_geo/scale-on-fossil-ggtree-new.svg',
'coord_geo/scale-on-ggtree-new.svg',
'coord_geo/scales-on-different-sides1-new.svg',
'coord_geo/scales-on-different-sides2-new.svg',
'coord_geo_polar/coord-geo-polar-grey-new.svg',
'coord_geo_polar/coord-geo-polar-new.svg',
'coord_geo_polar/coord-geo-polar-pos-new.svg',
'coord_geo_polar/scale-on-fossil-ggtree-new.svg',
'coord_geo_polar/scale-on-fossil-ggtree-with-labels-new.svg',
'coord_geo_polar/stacked-scales-new.svg',
'coord_geo_radial/coord-geo-radial-new.svg',
'coord_geo_radial/scale-on-fossil-ggtree-new.svg',
'coord_geo_radial/scale-on-fossil-ggtree-with-labels-new.svg',
'coord_geo_radial/stacked-scales-new.svg',
'geom_text_phylo/geom-text-phylo-new.svg',
'ggarrange2/double-ggarrange2-layout-new.svg',
'ggarrange2/double-ggarrange2-new.svg',
'ggarrange2/ggarrange2-no-dims-layout-new.svg', …,
'patterns/scale-fill-geopattern-na2-new.svg', and
'patterns/scale-fill-geopattern-new.svg'
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘coord.Rmd’ using rmarkdown
--- finished re-building ‘coord.Rmd’
--- re-building ‘coord_geo.Rmd’ using rmarkdown
--- finished re-building ‘coord_geo.Rmd’
--- re-building ‘geo.Rmd’ using rmarkdown
--- finished re-building ‘geo.Rmd’
--- re-building ‘ggarrange2.Rmd’ using rmarkdown
Quitting from ggarrange2.Rmd:14-23 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggtree'
---
Backtrace:
▆
1. └─base::library(ggtree)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ggarrange2.Rmd' failed with diagnostics:
there is no package called 'ggtree'
--- failed re-building ‘ggarrange2.Rmd’
--- re-building ‘phylogenies.Rmd’ using rmarkdown
Quitting from phylogenies.Rmd:18-32 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggtree'
---
Backtrace:
▆
1. └─base::library(ggtree)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'phylogenies.Rmd' failed with diagnostics:
there is no package called 'ggtree'
--- failed re-building ‘phylogenies.Rmd’
--- re-building ‘time.Rmd’ using rmarkdown
--- finished re-building ‘time.Rmd’
--- re-building ‘traits.Rmd’ using rmarkdown
--- finished re-building ‘traits.Rmd’
SUMMARY: processing the following files failed:
‘ggarrange2.Rmd’ ‘phylogenies.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64