Last updated on 2026-04-29 16:55:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.12.21 | 192.43 | 410.95 | 603.38 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.12.21 | 135.05 | 284.99 | 420.04 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.12.21 | 275.00 | 581.29 | 856.29 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.12.21 | 359.00 | 592.19 | 951.19 | OK | |
| r-devel-windows-x86_64 | 1.12.21 | 325.00 | 389.00 | 714.00 | OK | |
| r-patched-linux-x86_64 | 1.12.21 | 175.72 | 387.93 | 563.65 | OK | |
| r-release-linux-x86_64 | 1.12.21 | 179.82 | 385.25 | 565.07 | OK | |
| r-release-macos-arm64 | 1.12.21 | 37.00 | 72.00 | 109.00 | OK | |
| r-release-macos-x86_64 | 1.12.21 | 107.00 | 479.00 | 586.00 | NOTE | |
| r-release-windows-x86_64 | 1.12.21 | 319.00 | 381.00 | 700.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.12.21 | OK | ||||
| r-oldrel-macos-x86_64 | 1.12.21 | 95.00 | 440.00 | 535.00 | OK | |
| r-oldrel-windows-x86_64 | 1.12.21 | 343.00 | 536.00 | 879.00 | OK |
Version: 1.12.21
Check: compiled code
Result: NOTE
File ‘bigsnpr/libs/bigsnpr.so’:
Found non-API call to R: ‘R_UnboundValue’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavor: r-release-macos-x86_64
Version: 1.12.21
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [176s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(bigsnpr)
Loading required package: bigstatsr
>
> for (k in 1:9)
+ test_check("bigsnpr", filter = paste0(k, '-'))
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 268 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• is_cran is TRUE (1): 'test-1-readBed.R:53:3'
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 268 ]
[ FAIL 0 | WARN 0 | SKIP 3 | PASS 219 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• is_cran is TRUE (3): 'test-2-autoSVD.R:28:3', 'test-2-autoSVD.R:76:3',
'test-2-bed-clumping-SVD.R:7:1'
[ FAIL 0 | WARN 0 | SKIP 3 | PASS 219 ]
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 11 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• is_cran is TRUE (2): 'test-3-fastImpute.R:12:3', 'test-3-plink-QC.R:6:1'
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 95 ]
Saving _problems/test-5-match-96.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 135 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-5-match.R:95:3'): snp_asGeneticPos() works ─────────────────────
Error in `serverSocket(port = port)`: creation of server socket failed: port 11169 cannot be opened
Backtrace:
▆
1. └─bigsnpr::snp_asGeneticPos(...) at test-5-match.R:95:3
2. └─bigsnpr::snp_split(...)
3. └─bigparallelr::register_parallel(ncores)
4. └─parallel::makeCluster(ncores, ...)
5. └─parallel::makePSOCKcluster(names = spec, ...)
6. └─base::serverSocket(port = port)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64