Last updated on 2026-03-05 10:54:15 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.1 | 2.60 | 49.92 | 52.52 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.1 | 0.23 | 2.90 | 3.13 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.1 | 59.92 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.1 | 69.43 | ERROR | |||
| r-devel-macos-arm64 | 0.3.1 | 1.00 | 34.00 | 35.00 | OK | |
| r-devel-windows-x86_64 | 0.3.1 | 4.00 | 126.00 | 130.00 | OK | |
| r-patched-linux-x86_64 | 0.3.1 | 2.73 | 47.37 | 50.10 | OK | |
| r-release-linux-x86_64 | 0.3.1 | 2.44 | 45.83 | 48.27 | OK | |
| r-release-macos-arm64 | 0.3.1 | 4.00 | ERROR | |||
| r-release-macos-x86_64 | 0.3.1 | 2.00 | 305.00 | 307.00 | OK | |
| r-release-windows-x86_64 | 0.3.1 | 9.00 | 146.00 | 155.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.1 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.3.1 | 2.00 | 317.00 | 319.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.1 | 6.00 | 161.00 | 167.00 | OK |
Version: 0.3.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘snpStats’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-macos-arm64, r-oldrel-macos-arm64
Version: 0.3.1
Check: examples
Result: ERROR
Running examples in ‘TriadSim-Ex.R’ failed
The error most likely occurred in:
> ### Name: fit.risk.model.par
> ### Title: Resample families based on the risk model
> ### Aliases: fit.risk.model.par
>
> ### ** Examples
>
> tar.snp <- c(21, 118, 121, 140, 155, 168, 218, 383)
> found.brks <- get.brks(N.brk=3,n.ped=1000, snp.all2, tar.snp,rcmb.rate=NA)
> breaks <- found.brks[[1]]
> family.position <- found.brks[[2]]
> betas <- c(-6.4, 3.2, 5.8)
> pwy <- list(1:4,5:8)
> m.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_mom')
> f.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_dad')
> k.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_kid')
> # the preloaded data frame snp.all2 contains the data frame read from the corresponding .bim file.
> target.geno <- get.target.geno(c(m.file,f.file,k.file), tar.snp,snp.all2)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/data/gannet/ripley/R/test-clang/snpStats/libs/snpStats.so':
/data/gannet/ripley/R/test-clang/snpStats/libs/snpStats.so: undefined symbol: IS_S4_OBJECT
Calls: get.target.geno -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘TriadSim.Rmd’ using rmarkdown
Quitting from TriadSim.Rmd:19-28 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/data/gannet/ripley/R/test-clang/snpStats/libs/snpStats.so':
/data/gannet/ripley/R/test-clang/snpStats/libs/snpStats.so: undefined symbol: IS_S4_OBJECT
---
Backtrace:
▆
1. ├─TriadSim::TriadSim(...)
2. │ └─TriadSim::get.target.geno(input.plink.file, target.snp, snp.all2)
3. └─base::loadNamespace(x)
4. └─base::library.dynam(lib, package, package.lib)
5. └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'TriadSim.Rmd' failed with diagnostics:
unable to load shared object '/data/gannet/ripley/R/test-clang/snpStats/libs/snpStats.so':
/data/gannet/ripley/R/test-clang/snpStats/libs/snpStats.so: undefined symbol: IS_S4_OBJECT
--- failed re-building ‘TriadSim.Rmd’
SUMMARY: processing the following file failed:
‘TriadSim.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.1
Check: examples
Result: ERROR
Running examples in ‘TriadSim-Ex.R’ failed
The error most likely occurred in:
> ### Name: fit.risk.model.par
> ### Title: Resample families based on the risk model
> ### Aliases: fit.risk.model.par
>
> ### ** Examples
>
> tar.snp <- c(21, 118, 121, 140, 155, 168, 218, 383)
> found.brks <- get.brks(N.brk=3,n.ped=1000, snp.all2, tar.snp,rcmb.rate=NA)
> breaks <- found.brks[[1]]
> family.position <- found.brks[[2]]
> betas <- c(-6.4, 3.2, 5.8)
> pwy <- list(1:4,5:8)
> m.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_mom')
> f.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_dad')
> k.file <- file.path(system.file(package = "TriadSim"),'extdata/pop1_4chr_kid')
> # the preloaded data frame snp.all2 contains the data frame read from the corresponding .bim file.
> target.geno <- get.target.geno(c(m.file,f.file,k.file), tar.snp,snp.all2)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/data/gannet/ripley/R/test-dev/snpStats/libs/snpStats.so':
/data/gannet/ripley/R/test-dev/snpStats/libs/snpStats.so: undefined symbol: IS_S4_OBJECT
Calls: get.target.geno -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘TriadSim.Rmd’ using rmarkdown
Quitting from TriadSim.Rmd:19-28 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/data/gannet/ripley/R/test-dev/snpStats/libs/snpStats.so':
/data/gannet/ripley/R/test-dev/snpStats/libs/snpStats.so: undefined symbol: IS_S4_OBJECT
---
Backtrace:
▆
1. ├─TriadSim::TriadSim(...)
2. │ └─TriadSim::get.target.geno(input.plink.file, target.snp, snp.all2)
3. └─base::loadNamespace(x)
4. └─base::library.dynam(lib, package, package.lib)
5. └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'TriadSim.Rmd' failed with diagnostics:
unable to load shared object '/data/gannet/ripley/R/test-dev/snpStats/libs/snpStats.so':
/data/gannet/ripley/R/test-dev/snpStats/libs/snpStats.so: undefined symbol: IS_S4_OBJECT
--- failed re-building ‘TriadSim.Rmd’
SUMMARY: processing the following file failed:
‘TriadSim.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc