Last updated on 2026-08-03 13:49:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.10 | 23.24 | 204.03 | 227.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.10 | 16.02 | 149.46 | 165.48 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 36.00 | 333.13 | 369.13 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 16.00 | 133.56 | 149.56 | OK | |
| r-devel-windows-x86_64 | 1.0.10 | 26.00 | 181.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.0.10 | 20.00 | 194.60 | 214.60 | OK | |
| r-release-linux-x86_64 | 1.0.10 | 19.22 | 193.78 | 213.00 | OK | |
| r-release-macos-arm64 | 1.0.10 | 7.00 | 55.00 | 62.00 | OK | |
| r-release-macos-x86_64 | 1.0.10 | 16.00 | 173.00 | 189.00 | OK | |
| r-release-windows-x86_64 | 1.0.10 | 27.00 | 186.00 | 213.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.10 | 6.00 | 46.00 | 52.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.10 | 16.00 | 163.00 | 179.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.10 | 34.00 | 246.00 | 280.00 | OK |
Version: 1.0.10
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0Snbte’ ‘~/tmp/scratch/Rtmp0awRPb’
‘~/tmp/scratch/Rtmp1dlad3’ ‘~/tmp/scratch/Rtmp35Wjet’
‘~/tmp/scratch/Rtmp3AAF6t’ ‘~/tmp/scratch/Rtmp3Y0fXS’
‘~/tmp/scratch/Rtmp49UKhV’ ‘~/tmp/scratch/Rtmp4J3qY6’
‘~/tmp/scratch/Rtmp4NUCBt’ ‘~/tmp/scratch/Rtmp4Ny8F3’
‘~/tmp/scratch/Rtmp4Qt0Mv’ ‘~/tmp/scratch/Rtmp4RRiaO’
‘~/tmp/scratch/Rtmp4lULF5’ ‘~/tmp/scratch/Rtmp4wkvCr’
‘~/tmp/scratch/Rtmp5GPbbF’ ‘~/tmp/scratch/Rtmp5SAJOF’
‘~/tmp/scratch/Rtmp5WNDxA’ ‘~/tmp/scratch/Rtmp5pv0VY’
‘~/tmp/scratch/Rtmp5u9S1d’ ‘~/tmp/scratch/Rtmp5uOAy4’
‘~/tmp/scratch/Rtmp610w3E’ ‘~/tmp/scratch/Rtmp6GtmxJ’
‘~/tmp/scratch/Rtmp6bSlyS’ ‘~/tmp/scratch/Rtmp7LuNIg’
‘~/tmp/scratch/Rtmp7iVdiE’ ‘~/tmp/scratch/Rtmp8DuLq4’
‘~/tmp/scratch/Rtmp8EjoVQ’ ‘~/tmp/scratch/Rtmp8F6Kyi’
‘~/tmp/scratch/Rtmp8fHbM3’ ‘~/tmp/scratch/Rtmp9P5z98’
‘~/tmp/scratch/Rtmp9mN55a’ ‘~/tmp/scratch/RtmpAMWBIp’
‘~/tmp/scratch/RtmpAOLUM0’ ‘~/tmp/scratch/RtmpAuwWwv’
‘~/tmp/scratch/RtmpB3aU75’ ‘~/tmp/scratch/RtmpB4yr3F’
‘~/tmp/scratch/RtmpBCLp4h’ ‘~/tmp/scratch/RtmpBcpXRB’
‘~/tmp/scratch/RtmpBhLozr’ ‘~/tmp/scratch/RtmpC8OlgH’
‘~/tmp/scratch/RtmpC9akf5’ ‘~/tmp/scratch/RtmpCC5XXX’
‘~/tmp/scratch/RtmpCaOzD0’ ‘~/tmp/scratch/RtmpD0Vt02’
‘~/tmp/scratch/RtmpDOt905’ ‘~/tmp/scratch/RtmpDXlB7O’
‘~/tmp/scratch/RtmpDbJqLw’ ‘~/tmp/scratch/RtmpEKJehZ’
‘~/tmp/scratch/RtmpEve0Z5’ ‘~/tmp/scratch/RtmpEy8pT3’
‘~/tmp/scratch/RtmpEz4NN9’ ‘~/tmp/scratch/RtmpFBuKm0’
‘~/tmp/scratch/RtmpFcSUKV’ ‘~/tmp/scratch/RtmpFdigNB’
‘~/tmp/scratch/RtmpFfcegs’ ‘~/tmp/scratch/RtmpG0sOuX’
‘~/tmp/scratch/RtmpGY5nBT’ ‘~/tmp/scratch/RtmpH0kK9p’
‘~/tmp/scratch/RtmpHB2d07’ ‘~/tmp/scratch/RtmpHhhwGS’
‘~/tmp/scratch/RtmpI3IYOk’ ‘~/tmp/scratch/RtmpIHxvX4’
‘~/tmp/scratch/RtmpIJRHrO’ ‘~/tmp/scratch/RtmpILh7xF’
‘~/tmp/scratch/RtmpIeIkrL’ ‘~/tmp/scratch/RtmpJnteFx’
‘~/tmp/scratch/RtmpKAGmcA’ ‘~/tmp/scratch/RtmpKMQWq9’
‘~/tmp/scratch/RtmpKZ9Sly’ ‘~/tmp/scratch/RtmpKz8b2L’
‘~/tmp/scratch/RtmpLhjs2T’ ‘~/tmp/scratch/RtmpMg4Nx5’
‘~/tmp/scratch/RtmpNB0bBw’ ‘~/tmp/scratch/RtmpNQiVHj’
‘~/tmp/scratch/RtmpNjU7UN’ ‘~/tmp/scratch/RtmpNopOaI’
‘~/tmp/scratch/RtmpORoiNM’ ‘~/tmp/scratch/RtmpPi9a4G’
‘~/tmp/scratch/RtmpPkq5cR’ ‘~/tmp/scratch/RtmpRS4AYz’
‘~/tmp/scratch/RtmpRVONKb’ ‘~/tmp/scratch/RtmpRcvxK4’
‘~/tmp/scratch/RtmpRyUTnD’ ‘~/tmp/scratch/RtmpS0BmAV’
‘~/tmp/scratch/RtmpSDmOsb’ ‘~/tmp/scratch/RtmpSM74Yc’
‘~/tmp/scratch/RtmpSNtsFL’ ‘~/tmp/scratch/RtmpTBsR1v’
‘~/tmp/scratch/RtmpUNJUNl’ ‘~/tmp/scratch/RtmpUzVovK’
‘~/tmp/scratch/RtmpVpRzWs’ ‘~/tmp/scratch/RtmpVqN0YY’
‘~/tmp/scratch/RtmpWXOShn’ ‘~/tmp/scratch/RtmpWYezxO’
‘~/tmp/scratch/RtmpXkpuPk’ ‘~/tmp/scratch/RtmpY26M1S’
‘~/tmp/scratch/RtmpYN4cze’ ‘~/tmp/scratch/RtmpZ4r0DU’
‘~/tmp/scratch/RtmpZR6xMx’ ‘~/tmp/scratch/RtmpZcqyOP’
‘~/tmp/scratch/RtmpZi4qvd’ ‘~/tmp/scratch/RtmpZqJhvi’
‘~/tmp/scratch/RtmpZrJdKi’ ‘~/tmp/scratch/Rtmpa4q22s’
‘~/tmp/scratch/RtmpaCBUIW’ ‘~/tmp/scratch/RtmpaiF1Ta’
‘~/tmp/scratch/RtmpbOq24f’ ‘~/tmp/scratch/Rtmpc5lhdp’
‘~/tmp/scratch/RtmpcAGsO4’ ‘~/tmp/scratch/RtmpcFFwNS’
‘~/tmp/scratch/Rtmpd1yq1Q’ ‘~/tmp/scratch/Rtmpd2r0tl’
‘~/tmp/scratch/Rtmpdy9Grt’ ‘~/tmp/scratch/RtmpdzgVmb’
‘~/tmp/scratch/Rtmpe8MR5H’ ‘~/tmp/scratch/RtmpeHIaGA’
‘~/tmp/scratch/RtmpeOHjv8’ ‘~/tmp/scratch/RtmpeT2shH’
‘~/tmp/scratch/Rtmpf7w1LK’ ‘~/tmp/scratch/Rtmpf8PMa0’
‘~/tmp/scratch/RtmpfEMPir’ ‘~/tmp/scratch/RtmpfT7CSN’
‘~/tmp/scratch/RtmpfUnYz8’ ‘~/tmp/scratch/RtmpfxNroL’
‘~/tmp/scratch/RtmpgrmPT8’ ‘~/tmp/scratch/Rtmph3xuzb’
‘~/tmp/scratch/Rtmph9uR6W’ ‘~/tmp/scratch/Rtmphe352q’
‘~/tmp/scratch/RtmphenPRI’ ‘~/tmp/scratch/RtmphuD334’
‘~/tmp/scratch/RtmphvbnmA’ ‘~/tmp/scratch/Rtmpi6DJgq’
‘~/tmp/scratch/Rtmpi6je0a’ ‘~/tmp/scratch/RtmpjVQdfB’
‘~/tmp/scratch/RtmpjpzS0L’ ‘~/tmp/scratch/RtmpkHfdHB’
‘~/tmp/scratch/RtmpkYik1J’ ‘~/tmp/scratch/RtmpkgjBc3’
‘~/tmp/scratch/Rtmpkz6JOG’ ‘~/tmp/scratch/RtmplGDNCr’
‘~/tmp/scratch/Rtmpls4oGJ’ ‘~/tmp/scratch/RtmpmgbRsL’
‘~/tmp/scratch/Rtmpmq4ET5’ ‘~/tmp/scratch/RtmpnAZbcF’
‘~/tmp/scratch/RtmpoGGkJJ’ ‘~/tmp/scratch/RtmpoKhMWq’
‘~/tmp/scratch/RtmpoP41lA’ ‘~/tmp/scratch/RtmpoYG138’
‘~/tmp/scratch/RtmpoZPWNG’ ‘~/tmp/scratch/Rtmpp9OS7A’
‘~/tmp/scratch/RtmppC0BFw’ ‘~/tmp/scratch/RtmppzSrHw’
‘~/tmp/scratch/RtmpqJtQiC’ ‘~/tmp/scratch/RtmpqeYdAn’
‘~/tmp/scratch/RtmpqevuHM’ ‘~/tmp/scratch/RtmprW0jZA’
‘~/tmp/scratch/RtmprcGfYM’ ‘~/tmp/scratch/RtmprwgESD’
‘~/tmp/scratch/Rtmps6tEqX’ ‘~/tmp/scratch/Rtmpsf6rOb’
‘~/tmp/scratch/Rtmpt7u59F’ ‘~/tmp/scratch/RtmptDDtFs’
‘~/tmp/scratch/Rtmpu9JlvA’ ‘~/tmp/scratch/RtmpxA8vuZ’
‘~/tmp/scratch/Rtmpxylq9v’ ‘~/tmp/scratch/RtmpyIftTz’
‘~/tmp/scratch/RtmpyLRnyv’ ‘~/tmp/scratch/RtmpybXd39’
‘~/tmp/scratch/RtmpymCXib’ ‘~/tmp/scratch/RtmpyutGaM’
‘~/tmp/scratch/RtmpzEuUiF’ ‘~/tmp/scratch/RtmpzsQALb’
‘~/tmp/scratch/xvfb-run.0g6Uww’ ‘~/tmp/scratch/xvfb-run.1DovBd’
‘~/tmp/scratch/xvfb-run.1ZS6m8’ ‘~/tmp/scratch/xvfb-run.1dnObG’
‘~/tmp/scratch/xvfb-run.1na8gr’ ‘~/tmp/scratch/xvfb-run.3e7sOH’
‘~/tmp/scratch/xvfb-run.45V8z6’ ‘~/tmp/scratch/xvfb-run.4A52OB’
‘~/tmp/scratch/xvfb-run.4WoJ6s’ ‘~/tmp/scratch/xvfb-run.5B4hv8’
‘~/tmp/scratch/xvfb-run.5ceiel’ ‘~/tmp/scratch/xvfb-run.5yYsoX’
‘~/tmp/scratch/xvfb-run.B6eOwm’ ‘~/tmp/scratch/xvfb-run.BQ5y9c’
‘~/tmp/scratch/xvfb-run.BlRrgA’ ‘~/tmp/scratch/xvfb-run.ByFDNI’
‘~/tmp/scratch/xvfb-run.CHkF7F’ ‘~/tmp/scratch/xvfb-run.DAIYLK’
‘~/tmp/scratch/xvfb-run.EH76th’ ‘~/tmp/scratch/xvfb-run.EJSsgt’
‘~/tmp/scratch/xvfb-run.ETuowa’ ‘~/tmp/scratch/xvfb-run.EUBpk2’
‘~/tmp/scratch/xvfb-run.GvrFkw’ ‘~/tmp/scratch/xvfb-run.HAHROF’
‘~/tmp/scratch/xvfb-run.HT8Wi8’ ‘~/tmp/scratch/xvfb-run.HuKVKf’
‘~/tmp/scratch/xvfb-run.IzrxAw’ ‘~/tmp/scratch/xvfb-run.J5FfMV’
‘~/tmp/scratch/xvfb-run.Js9Ogs’ ‘~/tmp/scratch/xvfb-run.K4MWvv’
‘~/tmp/scratch/xvfb-run.LF4lAd’ ‘~/tmp/scratch/xvfb-run.MPuN4D’
‘~/tmp/scratch/xvfb-run.NqnlZi’ ‘~/tmp/scratch/xvfb-run.O5NLhF’
‘~/tmp/scratch/xvfb-run.OYPDNb’ ‘~/tmp/scratch/xvfb-run.PMxdq3’
‘~/tmp/scratch/xvfb-run.QJfbgs’ ‘~/tmp/scratch/xvfb-run.SZjIbb’
‘~/tmp/scratch/xvfb-run.SfH57Y’ ‘~/tmp/scratch/xvfb-run.SlsIaS’
‘~/tmp/scratch/xvfb-run.TjldGl’ ‘~/tmp/scratch/xvfb-run.UtvZx3’
‘~/tmp/scratch/xvfb-run.XFuGSX’ ‘~/tmp/scratch/xvfb-run.Xeg3Xd’
‘~/tmp/scratch/xvfb-run.XzoHaI’ ‘~/tmp/scratch/xvfb-run.Z7E3sF’
‘~/tmp/scratch/xvfb-run.buLxcs’ ‘~/tmp/scratch/xvfb-run.dQFlUW’
‘~/tmp/scratch/xvfb-run.f8AW5Z’ ‘~/tmp/scratch/xvfb-run.fic36v’
‘~/tmp/scratch/xvfb-run.g2CCzs’ ‘~/tmp/scratch/xvfb-run.gGUiQ0’
‘~/tmp/scratch/xvfb-run.gytwEb’ ‘~/tmp/scratch/xvfb-run.hIyL5L’
‘~/tmp/scratch/xvfb-run.iyQzCH’ ‘~/tmp/scratch/xvfb-run.jWlOz3’
‘~/tmp/scratch/xvfb-run.kXLKMy’ ‘~/tmp/scratch/xvfb-run.kbTG0c’
‘~/tmp/scratch/xvfb-run.lEzQRc’ ‘~/tmp/scratch/xvfb-run.lazlb8’
‘~/tmp/scratch/xvfb-run.ot4ksq’ ‘~/tmp/scratch/xvfb-run.p9SShM’
‘~/tmp/scratch/xvfb-run.qILvtN’ ‘~/tmp/scratch/xvfb-run.qPq7u9’
‘~/tmp/scratch/xvfb-run.syH3rg’ ‘~/tmp/scratch/xvfb-run.tsXYvl’
‘~/tmp/scratch/xvfb-run.u9WrxB’ ‘~/tmp/scratch/xvfb-run.uxA2Qv’
‘~/tmp/scratch/xvfb-run.vARKXO’ ‘~/tmp/scratch/xvfb-run.vXvZUY’
‘~/tmp/scratch/xvfb-run.xQ6LAN’ ‘~/tmp/scratch/xvfb-run.y8NOKY’
‘~/tmp/scratch/xvfb-run.yME9Fu’ ‘~/tmp/scratch/xvfb-run.z31Z0X’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.10
Check: examples
Result: ERROR
Running examples in ‘SATS-Ex.R’ failed
The error most likely occurred in:
> ### Name: GenerateLMatrix
> ### Title: Generate an L Matrix
> ### Aliases: GenerateLMatrix
>
> ### ** Examples
>
> data(SimData, package="SATS")
>
> Panel_context <- GeneratePanelSize(genomic_information=SimData$PanelEx, Class="SBS",
+ SBS_order="COSMIC")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’
Error in myGetSeq(ref.genome, Seq_assay_GRanges) :
Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Calls: GeneratePanelSize -> GeneratePanelSize_SBS -> myGetSeq
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64