CRAN Package Check Results for Package RMark

Last updated on 2026-08-01 00:51:13 CEST.

Flavor	Version	T_install	T_check	T_total	Status	Flags
r-devel-linux-x86_64-debian-clang	3.1.0	19.28	145.19	164.47	OK	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc	3.1.0	12.71	103.01	115.72	NOTE	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang	3.1.0	33.00	220.67	253.67	NOTE
r-devel-linux-x86_64-fedora-gcc	3.1.0	13.00	95.13	108.13	NOTE
r-devel-windows-x86_64	3.1.0	30.00	177.00	207.00	OK
r-patched-linux-x86_64	3.1.0	20.75	132.55	153.30	OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-linux-x86_64	3.0.8	17.30	132.98	150.28	OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-macos-arm64	3.1.0	5.00	32.00	37.00	ERROR
r-release-macos-x86_64	3.1.0	14.00	121.00	135.00	ERROR
r-release-windows-x86_64	3.1.0	23.00	180.00	203.00	OK
r-oldrel-macos-arm64	3.1.0	4.00	35.00	39.00	ERROR
r-oldrel-macos-x86_64	3.1.0	14.00	147.00	161.00	ERROR
r-oldrel-windows-x86_64	3.1.0	32.00	220.00	252.00	OK

Check Details

Version: 3.1.0
Flags: --install=fake --no-examples --no-tests --no-vignettes
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp05Bbnd’ ‘~/tmp/scratch/Rtmp09DYIM’ ‘~/tmp/scratch/Rtmp0l2AJN’ ‘~/tmp/scratch/Rtmp0pVI1b’ ‘~/tmp/scratch/Rtmp1WrU32’ ‘~/tmp/scratch/Rtmp1WwWFh’ ‘~/tmp/scratch/Rtmp20WngF’ ‘~/tmp/scratch/Rtmp2WNrQH’ ‘~/tmp/scratch/Rtmp2bSpCE’ ‘~/tmp/scratch/Rtmp2rSfdk’ ‘~/tmp/scratch/Rtmp38IvqD’ ‘~/tmp/scratch/Rtmp3P1s7a’ ‘~/tmp/scratch/Rtmp3ScKiz’ ‘~/tmp/scratch/Rtmp3Zrqd5’ ‘~/tmp/scratch/Rtmp3cnbVo’ ‘~/tmp/scratch/Rtmp3kdqAW’ ‘~/tmp/scratch/Rtmp4Ay2S3’ ‘~/tmp/scratch/Rtmp4BQu45’ ‘~/tmp/scratch/Rtmp4kUNDu’ ‘~/tmp/scratch/Rtmp4vrPcW’ ‘~/tmp/scratch/Rtmp4zx8mM’ ‘~/tmp/scratch/Rtmp5K3rP6’ ‘~/tmp/scratch/Rtmp5ONW0K’ ‘~/tmp/scratch/Rtmp5nbDMF’ ‘~/tmp/scratch/Rtmp7LI7sj’ ‘~/tmp/scratch/Rtmp7SxgIM’ ‘~/tmp/scratch/Rtmp8ZC2Yz’ ‘~/tmp/scratch/Rtmp9a2JWY’ ‘~/tmp/scratch/Rtmp9hkOvi’ ‘~/tmp/scratch/RtmpAOZu89’ ‘~/tmp/scratch/RtmpAOvDiL’ ‘~/tmp/scratch/RtmpAUudMi’ ‘~/tmp/scratch/RtmpB1yhPS’ ‘~/tmp/scratch/RtmpCTKTEU’ ‘~/tmp/scratch/RtmpDAboap’ ‘~/tmp/scratch/RtmpDqtbqK’ ‘~/tmp/scratch/RtmpDr3N2Z’ ‘~/tmp/scratch/RtmpEyg64k’ ‘~/tmp/scratch/RtmpF7Yo27’ ‘~/tmp/scratch/RtmpFdA9U2’ ‘~/tmp/scratch/RtmpG2qF4e’ ‘~/tmp/scratch/RtmpGKi4Hg’ ‘~/tmp/scratch/RtmpGbTZnx’ ‘~/tmp/scratch/RtmpGwurks’ ‘~/tmp/scratch/RtmpHc8Dn7’ ‘~/tmp/scratch/RtmpIe1O2W’ ‘~/tmp/scratch/RtmpIoDgGR’ ‘~/tmp/scratch/RtmpKp8C7U’ ‘~/tmp/scratch/RtmpLl9EBB’ ‘~/tmp/scratch/RtmpLwr9d0’ ‘~/tmp/scratch/RtmpMSC7sX’ ‘~/tmp/scratch/RtmpMmcAtQ’ ‘~/tmp/scratch/RtmpN83vKo’ ‘~/tmp/scratch/RtmpNFVMbK’ ‘~/tmp/scratch/RtmpNqFSP8’ ‘~/tmp/scratch/RtmpOZ80dX’ ‘~/tmp/scratch/RtmpP5uZkB’ ‘~/tmp/scratch/RtmpQXTv7W’ ‘~/tmp/scratch/RtmpQm05Vt’ ‘~/tmp/scratch/RtmpR8PvGa’ ‘~/tmp/scratch/RtmpRAbvJz’ ‘~/tmp/scratch/RtmpRG81tz’ ‘~/tmp/scratch/RtmpRTGuli’ ‘~/tmp/scratch/RtmpRdgZhz’ ‘~/tmp/scratch/RtmpRfLiVs’ ‘~/tmp/scratch/RtmpRhn1hd’ ‘~/tmp/scratch/RtmpSe84Xe’ ‘~/tmp/scratch/RtmpShil6h’ ‘~/tmp/scratch/RtmpSltkAs’ ‘~/tmp/scratch/RtmpSmbCqh’ ‘~/tmp/scratch/RtmpTv1oql’ ‘~/tmp/scratch/RtmpVQ64lF’ ‘~/tmp/scratch/RtmpW1wusy’ ‘~/tmp/scratch/RtmpWDSRUi’ ‘~/tmp/scratch/RtmpWPPhHJ’ ‘~/tmp/scratch/RtmpWkrHit’ ‘~/tmp/scratch/RtmpX1FFnk’ ‘~/tmp/scratch/RtmpXNPJ5g’ ‘~/tmp/scratch/RtmpXlsZQ9’ ‘~/tmp/scratch/RtmpXmgh7s’ ‘~/tmp/scratch/RtmpXucFEw’ ‘~/tmp/scratch/RtmpYYINDQ’ ‘~/tmp/scratch/RtmpZXRNtl’ ‘~/tmp/scratch/RtmpaC3hMC’ ‘~/tmp/scratch/RtmpaOd9rK’ ‘~/tmp/scratch/RtmpaWQ1U0’ ‘~/tmp/scratch/Rtmpbj3ELO’ ‘~/tmp/scratch/RtmpbvoSsi’ ‘~/tmp/scratch/RtmpcD096w’ ‘~/tmp/scratch/RtmpcP7atX’ ‘~/tmp/scratch/RtmpclmbYZ’ ‘~/tmp/scratch/Rtmpd7rCpM’ ‘~/tmp/scratch/RtmpdPHqVO’ ‘~/tmp/scratch/RtmpelsOJy’ ‘~/tmp/scratch/RtmpemKjJn’ ‘~/tmp/scratch/RtmpemiRaj’ ‘~/tmp/scratch/RtmpeztKnE’ ‘~/tmp/scratch/RtmpgKEGvi’ ‘~/tmp/scratch/RtmphUKxmI’ ‘~/tmp/scratch/Rtmpj2DOZf’ ‘~/tmp/scratch/RtmpjWy1fE’ ‘~/tmp/scratch/RtmpjdQjjl’ ‘~/tmp/scratch/RtmpkOT0i2’ ‘~/tmp/scratch/RtmplLrikF’ ‘~/tmp/scratch/RtmpmE4uba’ ‘~/tmp/scratch/RtmpmL6f7c’ ‘~/tmp/scratch/RtmpmqvF6C’ ‘~/tmp/scratch/RtmpnI4bne’ ‘~/tmp/scratch/RtmpnLKLpp’ ‘~/tmp/scratch/RtmpnbFmud’ ‘~/tmp/scratch/RtmporWG7o’ ‘~/tmp/scratch/RtmppAHbDK’ ‘~/tmp/scratch/RtmppGlhBm’ ‘~/tmp/scratch/RtmppRM7nA’ ‘~/tmp/scratch/RtmprGay8K’ ‘~/tmp/scratch/RtmprYjrA3’ ‘~/tmp/scratch/RtmprwZa0q’ ‘~/tmp/scratch/RtmprxpLXo’ ‘~/tmp/scratch/RtmpserAQk’ ‘~/tmp/scratch/RtmptXBRIv’ ‘~/tmp/scratch/RtmpuXmU0p’ ‘~/tmp/scratch/RtmpvD6lt7’ ‘~/tmp/scratch/RtmpvTysVa’ ‘~/tmp/scratch/RtmpvxJJdj’ ‘~/tmp/scratch/RtmpvxNBxb’ ‘~/tmp/scratch/RtmpwUcKHP’ ‘~/tmp/scratch/RtmpwoH2nm’ ‘~/tmp/scratch/Rtmpx7rEEd’ ‘~/tmp/scratch/RtmpxRgV3y’ ‘~/tmp/scratch/RtmpxSGjv3’ ‘~/tmp/scratch/RtmpyTBtAS’ ‘~/tmp/scratch/RtmpyioaZ3’ ‘~/tmp/scratch/RtmpznRF4E’ ‘~/tmp/scratch/xvfb-run.0lFCC3’ ‘~/tmp/scratch/xvfb-run.152toB’ ‘~/tmp/scratch/xvfb-run.1lQvRM’ ‘~/tmp/scratch/xvfb-run.28qZFt’ ‘~/tmp/scratch/xvfb-run.3FnNS8’ ‘~/tmp/scratch/xvfb-run.4zL1Sg’ ‘~/tmp/scratch/xvfb-run.5lL08N’ ‘~/tmp/scratch/xvfb-run.6H2MEg’ ‘~/tmp/scratch/xvfb-run.7kyoy1’ ‘~/tmp/scratch/xvfb-run.7uAmyU’ ‘~/tmp/scratch/xvfb-run.8b69Ss’ ‘~/tmp/scratch/xvfb-run.8cVDOn’ ‘~/tmp/scratch/xvfb-run.9dO2UN’ ‘~/tmp/scratch/xvfb-run.AgxHSo’ ‘~/tmp/scratch/xvfb-run.Ajrn3X’ ‘~/tmp/scratch/xvfb-run.BKG2Kh’ ‘~/tmp/scratch/xvfb-run.CPiytO’ ‘~/tmp/scratch/xvfb-run.DmPsDX’ ‘~/tmp/scratch/xvfb-run.H5scoe’ ‘~/tmp/scratch/xvfb-run.HOWQeV’ ‘~/tmp/scratch/xvfb-run.HwFubo’ ‘~/tmp/scratch/xvfb-run.IJtj8H’ ‘~/tmp/scratch/xvfb-run.IWVUs8’ ‘~/tmp/scratch/xvfb-run.IxCfPD’ ‘~/tmp/scratch/xvfb-run.JEJqLF’ ‘~/tmp/scratch/xvfb-run.JtKWDL’ ‘~/tmp/scratch/xvfb-run.LO2rc8’ ‘~/tmp/scratch/xvfb-run.LUEkgx’ ‘~/tmp/scratch/xvfb-run.M9HbWp’ ‘~/tmp/scratch/xvfb-run.MbXbho’ ‘~/tmp/scratch/xvfb-run.Mqdm9s’ ‘~/tmp/scratch/xvfb-run.N0rJuj’ ‘~/tmp/scratch/xvfb-run.RCrKbm’ ‘~/tmp/scratch/xvfb-run.S9IxPx’ ‘~/tmp/scratch/xvfb-run.SdmyKj’ ‘~/tmp/scratch/xvfb-run.Szw5ZZ’ ‘~/tmp/scratch/xvfb-run.T1iIer’ ‘~/tmp/scratch/xvfb-run.TICRMP’ ‘~/tmp/scratch/xvfb-run.TgYt6b’ ‘~/tmp/scratch/xvfb-run.UShcuO’ ‘~/tmp/scratch/xvfb-run.VdGhnE’ ‘~/tmp/scratch/xvfb-run.WY3Jyh’ ‘~/tmp/scratch/xvfb-run.ZpHEMl’ ‘~/tmp/scratch/xvfb-run.aMBg2h’ ‘~/tmp/scratch/xvfb-run.aV1ja0’ ‘~/tmp/scratch/xvfb-run.dlY2go’ ‘~/tmp/scratch/xvfb-run.dv8VYx’ ‘~/tmp/scratch/xvfb-run.eNAdA6’ ‘~/tmp/scratch/xvfb-run.gAXHuj’ ‘~/tmp/scratch/xvfb-run.hPC8TE’ ‘~/tmp/scratch/xvfb-run.hoXpcq’ ‘~/tmp/scratch/xvfb-run.jI4FyX’ ‘~/tmp/scratch/xvfb-run.k3JYto’ ‘~/tmp/scratch/xvfb-run.l4WWuW’ ‘~/tmp/scratch/xvfb-run.lIJcrq’ ‘~/tmp/scratch/xvfb-run.mqeVKe’ ‘~/tmp/scratch/xvfb-run.nBJRsL’ ‘~/tmp/scratch/xvfb-run.nyOWBt’ ‘~/tmp/scratch/xvfb-run.pJVbZP’ ‘~/tmp/scratch/xvfb-run.pLvbh0’ ‘~/tmp/scratch/xvfb-run.q2vKzo’ ‘~/tmp/scratch/xvfb-run.r6Rxf7’ ‘~/tmp/scratch/xvfb-run.vQoPqy’ ‘~/tmp/scratch/xvfb-run.vVh1EK’ ‘~/tmp/scratch/xvfb-run.wR2JJP’ ‘~/tmp/scratch/xvfb-run.wXqolC’ ‘~/tmp/scratch/xvfb-run.xu9TYP’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.1.0
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘mark001.resbatch’ Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.1.0
Check: examples
Result: ERROR Running examples in ‘RMark-Ex.R’ failed The error most likely occurred in: > ### Name: Blackduck > ### Title: Black duck known fate data > ### Aliases: Blackduck > ### Keywords: datasets > > ### ** Examples > > > data(Blackduck) > # Change BirdAge to numeric; starting with version 1.6.3 factor variables are > # no longer allowed. They can work as in this example but they can be misleading > # and fail if the levels are non-numeric. The real parameters will remain > # unchanged but the betas will be different. > Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1 > run.Blackduck=function() + { + # + # Process data + # + bduck.processed=process.data(Blackduck,model="Known") + # + # Create default design data + # + bduck.ddl=make.design.data(bduck.processed) + # + # Add occasion specific data min < 0; I have no idea what it is + # + bduck.ddl$S$min=c(4,6,7,7,7,6,5,5) + # + # Define range of models for S + # + S.dot=list(formula=~1) + S.time=list(formula=~time) + S.min=list(formula=~min) + S.BirdAge=list(formula=~BirdAge) + # + # Note that in the following model in the MARK example, the covariates + # have been standardized. That means that the beta parameters will be different + # for BirdAge, Weight and their interaction but the likelihood and real parameter + # estimates are the same. + # + S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight) + S.BirdAge.Weight=list(formula=~BirdAge+Weight) + # + # Create model list and run assortment of models + # + model.list=create.model.list("Known") + bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl, + invisible=FALSE,threads=1,delete=TRUE) + + # + # Return model table and list of models + # + return(bduck.results) + } > bduck.results=run.Blackduck() S.BirdAge sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAge.Weight sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAgexWeight.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.dot sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.time sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe No mark models found Error in collect.models() : Calls: run.Blackduck -> mark.wrapper -> collect.models Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64