Last updated on 2025-12-13 18:48:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.6.0 | 37.92 | 243.33 | 281.25 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 3.6.0 | 0.30 | 2.98 | 3.28 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.6.0 | 71.00 | 337.85 | 408.85 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 3.6.0 | 66.00 | 331.74 | 397.74 | ERROR | |
| r-devel-windows-x86_64 | 3.6.0 | 38.00 | 259.00 | 297.00 | NOTE | |
| r-patched-linux-x86_64 | 3.6.0 | 35.74 | 226.17 | 261.91 | NOTE | |
| r-release-linux-x86_64 | 3.6.0 | 36.05 | 229.67 | 265.72 | NOTE | |
| r-release-macos-arm64 | 3.6.0 | NOTE | ||||
| r-release-macos-x86_64 | 3.6.0 | 22.00 | 209.00 | 231.00 | NOTE | |
| r-release-windows-x86_64 | 3.6.0 | 38.00 | 245.00 | 283.00 | NOTE | |
| r-oldrel-macos-arm64 | 3.6.0 | OK | ||||
| r-oldrel-macos-x86_64 | 3.6.0 | 23.00 | 198.00 | 221.00 | OK | |
| r-oldrel-windows-x86_64 | 3.6.0 | 55.00 | 322.00 | 377.00 | OK |
Version: 3.6.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘VDJ_build.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 3.6.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘Seurat’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.6.0
Check: examples
Result: ERROR
Running examples in ‘Platypus-Ex.R’ failed
The error most likely occurred in:
> ### Name: GEX_coexpression_coefficient
> ### Title: Coexpression of selected genes
> ### Aliases: GEX_coexpression_coefficient
>
> ### ** Examples
>
> GEX_coexpression_coefficient(GEX = Platypus::small_vgm[[2]]
+ , genes = c("CD19", "CD83"), subsample.n = "none", plot.dotmap = FALSE)
Error:
! The `slot` argument of `FetchData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
Backtrace:
▆
1. └─Platypus::GEX_coexpression_coefficient(...)
2. ├─SeuratObject::FetchData(GEX, vars = genes, slot = "counts")
3. └─SeuratObject:::FetchData.Seurat(GEX, vars = genes, slot = "counts")
4. └─SeuratObject::.Deprecate(...)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc