Last updated on 2026-07-08 00:52:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-15 | 3.04 | 241.39 | 244.43 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0-15 | 2.18 | 193.71 | 195.89 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-15 | 5.00 | 406.55 | 411.55 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0-15 | 403.40 | OK | |||
| r-devel-windows-x86_64 | 1.0-15 | 10.00 | 114.00 | 124.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.0-15 | 3.75 | 216.24 | 219.99 | OK | |
| r-release-linux-x86_64 | 1.0-15 | 3.02 | 217.26 | 220.28 | OK | |
| r-release-macos-arm64 | 1.0-15 | 1.00 | 95.00 | 96.00 | OK | |
| r-release-macos-x86_64 | 1.0-15 | 3.00 | 613.00 | 616.00 | OK | |
| r-release-windows-x86_64 | 1.0-15 | 7.00 | 104.00 | 111.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.0-15 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0-15 | 2.00 | 512.00 | 514.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0-15 | 7.00 | 88.00 | 95.00 | OK | --no-vignettes |
Version: 1.0-15
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Ch_analysing_longitudinal_dataI.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: Matrix
Attaching package: 'lme4'
The following object is masked from 'package:HSAUR3':
schizophrenia
Loading required package: mvtnorm
Loading required package: survival
Loading required package: TH.data
Loading required package: MASS
Attaching package: 'TH.data'
The following object is masked from 'package:MASS':
geyser
The following object is masked from 'package:HSAUR3':
birds
--- finished re-building 'Ch_analysing_longitudinal_dataI.Rnw'
--- re-building ‘Ch_analysing_longitudinal_dataII.Rnw’ using Sweave
Loading required package: HSAUR3
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Loading required package: Matrix
Attaching package: 'lme4'
The following object is masked from 'package:HSAUR3':
schizophrenia
Error: processing vignette 'Ch_analysing_longitudinal_dataII.Rnw' failed with diagnostics:
chunk 26 (label = ALDII-respiratory-lmer)
Error in eval(expr, .GlobalEnv) : Downdated VtV is not positive definite
--- failed re-building 'Ch_analysing_longitudinal_dataII.Rnw'
--- re-building ‘Ch_analysis_of_variance.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: RColorBrewer
--- finished re-building 'Ch_analysis_of_variance.Rnw'
--- re-building ‘Ch_bayesian_inference.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: survival
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'Ch_bayesian_inference.Rnw'
--- re-building ‘Ch_cluster_analysis.Rnw’ using Sweave
Loading required package: HSAUR3
Package 'mclust' version 6.1.3
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: 'mvtnorm'
The following object is masked from 'package:mclust':
dmvnorm
--- finished re-building 'Ch_cluster_analysis.Rnw'
--- re-building ‘Ch_conditional_inference.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: survival
Warning in chisq.test(suicides) :
Chi-squared approximation may be incorrect
--- finished re-building 'Ch_conditional_inference.Rnw'
--- re-building ‘Ch_density_estimation.Rnw’ using Sweave
Loading required package: HSAUR3
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: lattice
Attaching package: 'boot'
The following object is masked from 'package:flexmix':
boot
The following object is masked from 'package:lattice':
melanoma
Package 'mclust' version 6.1.3
Type 'citation("mclust")' for citing this R package in publications.
Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
argument 'replacement' has length > 1 and only the first element will be used
--- finished re-building 'Ch_density_estimation.Rnw'
--- re-building ‘Ch_errata.Rnw’ using Sweave
Loading required package: HSAUR3
--- finished re-building 'Ch_errata.Rnw'
--- re-building ‘Ch_gam.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: nlme
This is mgcv 1.9-4. For overview type '?mgcv'.
Loading required package: parallel
Loading required package: stabs
Loading required package: RColorBrewer
--- finished re-building 'Ch_gam.Rnw'
--- re-building ‘Ch_graphical_display.Rnw’ using Sweave
Loading required package: HSAUR3
Linking to GEOS 3.14.1, GDAL 3.13.1, PROJ 9.8.1; sf_use_s2()
is TRUE
--- finished re-building 'Ch_graphical_display.Rnw'
--- re-building ‘Ch_introduction_to_R.Rnw’ using Sweave
Loading required package: HSAUR3
Error in quantile.default(x, prob = c(0.25, 0.75), names = FALSE) :
missing values and NaN's not allowed if 'na.rm' is FALSE
--- finished re-building 'Ch_introduction_to_R.Rnw'
--- re-building ‘Ch_logistic_regression_glm.Rnw’ using Sweave
Loading required package: HSAUR3
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Loading required package: mvtnorm
Loading required package: TH.data
Attaching package: 'TH.data'
The following object is masked from 'package:MASS':
geyser
The following object is masked from 'package:HSAUR3':
birds
Waiting for profiling to be done...
--- finished re-building 'Ch_logistic_regression_glm.Rnw'
--- re-building ‘Ch_meta_analysis.Rnw’ using Sweave
Loading required package: HSAUR3
--- finished re-building 'Ch_meta_analysis.Rnw'
--- re-building ‘Ch_missing_values.Rnw’ using Sweave
Loading required package: HSAUR3
Attaching package: 'mice'
The following object is masked from 'package:HSAUR3':
toenail
The following object is masked from 'package:stats':
filter
The following objects are masked from 'package:base':
cbind, rbind
--- finished re-building 'Ch_missing_values.Rnw'
--- re-building ‘Ch_multidimensional_scaling.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: RColorBrewer
Warning in cmdscale(watervoles, k = 13, eig = TRUE) :
only 7 of the first 13 eigenvalues are > 0
--- finished re-building 'Ch_multidimensional_scaling.Rnw'
--- re-building ‘Ch_multiple_linear_regression.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: RColorBrewer
--- finished re-building 'Ch_multiple_linear_regression.Rnw'
--- re-building ‘Ch_principal_components_analysis.Rnw’ using Sweave
Loading required package: HSAUR3
--- finished re-building 'Ch_principal_components_analysis.Rnw'
--- re-building ‘Ch_quantile_regression.Rnw’ using Sweave
Loading required package: HSAUR3
Warning in trellis.par.set(list(plot.symbol = list(col = 1, pch = 20, cex = 0.7), :
Note: The default device has been opened to honour attempt to modify trellis settings
Loading required package: SparseM
Warning in rq.fit.br(x, y, tau = tau, ci = TRUE, ...) :
Solution may be nonunique
Warning in rq.fit.br(x, y, tau = tau, ci = TRUE, ...) :
Solution may be nonunique
--- finished re-building 'Ch_quantile_regression.Rnw'
--- re-building ‘Ch_recursive_partitioning.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: grid
randomForest 4.7-1.2
Type rfNews() to see new features/changes/bug fixes.
Loading required package: libcoin
Loading required package: mvtnorm
--- finished re-building 'Ch_recursive_partitioning.Rnw'
--- re-building ‘Ch_simple_inference.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: grid
--- finished re-building 'Ch_simple_inference.Rnw'
--- re-building ‘Ch_simultaneous_inference.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: mvtnorm
Loading required package: survival
Loading required package: TH.data
Loading required package: MASS
Attaching package: 'TH.data'
The following object is masked from 'package:MASS':
geyser
The following object is masked from 'package:HSAUR3':
birds
Loading required package: Matrix
Attaching package: 'lme4'
The following object is masked from 'package:HSAUR3':
schizophrenia
--- finished re-building 'Ch_simultaneous_inference.Rnw'
--- re-building ‘Ch_survival_analysis.Rnw’ using Sweave
Loading required package: HSAUR3
Loading required package: grid
Loading required package: libcoin
Loading required package: mvtnorm
Warning in plot.window(...) :
"legend.text" is not a graphical parameter
Warning in plot.window(...) : "legend.bty" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.text" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in box(...) : "legend.text" is not a graphical parameter
Warning in box(...) : "legend.bty" is not a graphical parameter
Warning in title(...) : "legend.text" is not a graphical parameter
Warning in title(...) : "legend.bty" is not a graphical parameter
--- finished re-building 'Ch_survival_analysis.Rnw'
SUMMARY: processing the following file failed:
‘Ch_analysing_longitudinal_dataII.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang