Last updated on 2026-10-09 12:57:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 6.0.3 | 45.35 | 641.04 | 686.39 | OK | |
| r-devel-linux-x86_64-debian-gcc | 6.0.3 | 33.08 | 474.96 | 508.04 | OK | |
| r-devel-linux-x86_64-fedora-clang | 6.0.3 | 39.00 | 142.80 | 181.80 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 6.0.3 | 39.00 | 148.65 | 187.65 | ERROR | |
| r-devel-windows-x86_64 | 6.0.3 | 57.00 | 835.00 | 892.00 | OK | |
| r-patched-linux-x86_64 | 6.0.3 | 48.00 | 616.04 | 664.04 | OK | |
| r-release-linux-x86_64 | 6.0.3 | OK | ||||
| r-release-macos-arm64 | 6.0.3 | 12.00 | 133.00 | 145.00 | OK | |
| r-release-macos-x86_64 | 6.0.3 | 34.00 | 478.00 | 512.00 | OK | |
| r-release-windows-x86_64 | 6.0.3 | 53.00 | 559.00 | 612.00 | OK | |
| r-oldrel-macos-arm64 | 6.0.3 | 10.00 | 163.00 | 173.00 | OK | |
| r-oldrel-macos-x86_64 | 6.0.3 | 33.00 | 515.00 | 548.00 | OK | |
| r-oldrel-windows-x86_64 | 6.0.3 | 69.00 | 782.00 | 851.00 | OK |
Version: 6.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("CohortMethod")
Loading required package: CohortMethod
Loading required package: DatabaseConnector
Loading required package: Cyclops
Loading required package: FeatureExtraction
Loading required package: Andromeda
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /tmp/RtmpJHiXNH/working_dir/RtmpZkx7en/GiBleed_5.3.zip to: /tmp/RtmpJHiXNH/working_dir/RtmpZkx7en/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("CohortMethod")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─Eunomia::getEunomiaConnectionDetails() at ./setup.R:6:3
15. │ └─Eunomia::getDatabaseFile(...)
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 6.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("CohortMethod")
Loading required package: CohortMethod
Loading required package: DatabaseConnector
Loading required package: Cyclops
Loading required package: FeatureExtraction
Loading required package: Andromeda
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /tmp/RtmpbUD6e4/working_dir/RtmpCh9bl9/GiBleed_5.3.zip to: /tmp/RtmpbUD6e4/working_dir/RtmpCh9bl9/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("CohortMethod")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─Eunomia::getEunomiaConnectionDetails() at ./setup.R:6:3
15. │ └─Eunomia::getDatabaseFile(...)
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc