Last updated on 2026-07-25 20:49:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 44.12 | 369.37 | 413.49 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 31.35 | 276.00 | 307.35 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 46.00 | 332.09 | 378.09 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 36.00 | 288.12 | 324.12 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 41.00 | 345.00 | 386.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 42.56 | 346.08 | 388.64 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 41.73 | 349.68 | 391.41 | OK | |
| r-release-macos-arm64 | 1.0.1 | 9.00 | 87.00 | 96.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.1 | 33.00 | 584.00 | 617.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.0 | 46.00 | 287.00 | 333.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 10.00 | 75.00 | 85.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.1 | 30.00 | 432.00 | 462.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.0 | 64.00 | 413.00 | 477.00 | OK |
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
2026-07-26 03:05:45.532 R[88945:473227] XType: Using static font registry.
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64