1a794dcf919013be13d51ec0f84a27ae *DESCRIPTION
13edd3542cf8e9ddd0dadb268976079a *NAMESPACE
7bf2f67e3f9964fb41bf6bc878f22f08 *NEWS.md
86bbe5c255ad9c3fd23fbe5026cd431b *R/AAcompare.R
0165c5ac24a41230700c68cb859b540f *R/filtfast.R
86e47ed43b8c11ccabed2b8ae8504ceb *R/gapremove.R
dc6f36c45c6dc738aef0f73c58befe1c *R/longreadvqs-package.R
c49b3bb2d3d0b5ef35b5697923813632 *R/otucompare.R
0b95f6395639ceda916e432727b87860 *R/pctopt.R
14db605d2ac0f0c17761a127feb1aa16 *R/snvcompare.R
b56ff2b193ecba52f9ec7f3b10cca008 *R/utils-pipe.R
24fd8102a5307163c16aa836717f55ce *R/vqsassess.R
56f18d89b1da040a6598576f669e6c8a *R/vqscompare.R
4d803c6283b27cc8529ad655867d0dfb *R/vqscustompct.R
31b38f69a118f010b806a557829dd00b *R/vqsout.R
bee07dc69a4f7c45e3a38e5f0bc305dc *R/vqsresub.R
b32ae8d8abd01eda28110270103c3269 *R/vqssub.R
9ca8fb3ed1c649ad37b83d91be766d1f *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
524cd1b975a807afe6f73bac50366772 *build/vignette.rds
03b9d6901e9133c31af1d9878f5c64e4 *inst/doc/longreadvqs-vignette.R
4b72a7fd2cfe01f117f6aefa6fdda00c *inst/doc/longreadvqs-vignette.Rmd
d57194ab82e21eb399f9e29468ed1bcc *inst/doc/longreadvqs-vignette.html
76f5c633c34bab7bc028babdcff058fd *inst/extdata/bad3'end.fasta
d4a93cb88de61f1f0f84c3445b32dee7 *inst/extdata/badend.fasta
0e5dce994c38052d9c3ee3ef51a7d521 *inst/extdata/dissimfast.fasta
7355c1d9db9e5314db9838efeb59d4ef *inst/extdata/gaprichfast.fasta
ac28cdb081d8618ed1818cdd8c06e8df *inst/extdata/m.fasta
0d732105c066255ccdb94d6c302cb9d0 *inst/extdata/mock.fasta
ca0a7c60bbdc423230f6bcf513dc2b06 *inst/extdata/s1.fasta
ec883f25d6ecf623369c69b733dc28ed *inst/extdata/s2.fasta
1e5c6fcea3e749bc3a70388e692227c9 *inst/extdata/s3.fasta
38c210f2e9e11f7b70aa1b8477cd56cd *inst/extdata/s4.fasta
0102b0103d006440eef87d37610d8252 *inst/extdata/sample1.fasta
7e5a45f5e518a4a87a13aef51ea746e4 *inst/extdata/sample2.fasta
105b45f3641e5c37bca3f04d7704dd0a *inst/extdata/sample3.fasta
245b614598023d66508b75360e1e9f2d *inst/extdata/sample4.fasta
9656630e9c7c358e68271867191d4b9b *inst/figures/imgfile.png
efabdde886b4c79c1394fc68085577e9 *man/AAcompare.Rd
74b64b360eac09aadd6aec4a6c228e92 *man/figures/fig0-1.png
8de2ba30de2036685948a402cec42d13 *man/figures/fig1-1.png
b393c39c1f4fdb236ce5a98d73af637c *man/figures/fig2-1.png
08b3e4c5de1cfd0f79813fafd51fdd07 *man/figures/fig3-1.png
0b47a406e3286fc5f69f3a98d10f1a4e *man/figures/fig4-1.png
75f408564d0961683411dc0aafa16d69 *man/figures/fig5-1.png
ab79d74bf39e61090726f40858852236 *man/figures/longreadvqslogo.png
7a21e741e688934242db43a802acc360 *man/filtfast.Rd
c8b0dbc88397108fdb7e6502d88b5069 *man/gapremove.Rd
0caac4b8cae5cd961622da5739552115 *man/longreadvqs-package.Rd
6a30c9b92ceb7a87b0bd46de0cad3c7b *man/otucompare.Rd
9bf7b01ee4a97a73918fd98b206891d9 *man/pctopt.Rd
8f4aad003a999fae004ba9361f9a99d6 *man/pipe.Rd
54361a975b0967ad3032002f85a520b7 *man/snvcompare.Rd
9e845661c9705e7641ece5747ef929ef *man/vqsassess.Rd
f5d662de3761a52acfb179d507d7dc5f *man/vqscompare.Rd
47a28f89e5a7223d5e26fec0e11711d2 *man/vqscustompct.Rd
51a78718bee96cae043e49c4558fd5be *man/vqsout.Rd
feda01bfb1cea052607c9d8f6937ce5b *man/vqsresub.Rd
4f5db616497d52525af160463e15c33d *man/vqssub.Rd
4b72a7fd2cfe01f117f6aefa6fdda00c *vignettes/longreadvqs-vignette.Rmd
