1b49995a890207903719316d76947bc7 *CollocInferManual.pdf
3790f6a4fec478d984726ea8aa19f57d *DESCRIPTION
fb2d3d6c894dd952ab2f47b2ae7d5e8e *Devel.Examples/ChemoEx2.r
07eccd0600523365011d88c8577bcd9c *Devel.Examples/FhN.inputEx.R
fbbd0e2c78e1cf9b87daafd1b31dca97 *Devel.Examples/LV.R
1349741f8fb3a2a3ac2cb843fc327da5 *Devel.Examples/LVEX.R
8413abde5f954620273529252c6e049f *Devel.Examples/LynxHare.dat
46bd0dea1c4f9e7d7fdbba8f125988a8 *Devel.Examples/LynxHare2.dat
3e25a52f453b95f96763e0b9393a180f *Devel.Examples/SEIRRV.R
e888db665c14b19ab524c5b5a53b3377 *Devel.Examples/SEIRRVEX.R
37bbbe0dd7077ce3780fa13b9e52cfc7 *Devel.Examples/fhn.input.R
930de39ba62242ecc092721d158d198f *Devel.Examples/pomp.sir.R
401c288ac920ca7d11bc7bc162cd4216 *Devel/Colloc.MCMC.R
8fd7123082402e2fe5fbf75ff8bdc815 *Devel/Colloc.MCMC.rd
7cc4ab2f4b7f0f3cb0ac064eafb8e392 *Devel/Colloc.MCMC1.R
c1bddc9899dcbbb87146f16399a15498 *Devel/Colloc.MCMCfixpar.r
16c4369e33742018d27c23a03fde2c2f *Devel/Colloc.MCMCtestoncoefs.r
636de72921797f858864e02441fc74ba *Devel/EM.R
bea605e8c85d75aa8719d2792dd5b353 *Devel/EM.rd
9c418399df3101b73f3f3974cac5b145 *Devel/EM.rep.rd
8dacd75122f779778b0e5a1945340ffb *Devel/FitMatch.rep.rd
d026cdd912c6dbea276137ad5b9f6721 *Devel/ParsMatch.rep.rd
4af23e9352ff5216353b6346c9434915 *Devel/Profile.rep.rd
3f912d0b244cb03d2228723b701c0a8a *Devel/SEIR.r
8c17d6f0dd78eb3fc9531d8ce7ff4641 *Devel/SRK2proc.r
8f98e5947d0fbdcef2d11d5d26a3fc21 *Devel/SplineCoefs.rep.rd
df903b4b9314dffbd4964484c478b98d *Devel/datagenFhNex.r
752a646e7718e8705d38184faa092669 *Devel/estep.r
abab6ec33ebbea443ab89171bad2c9f0 *Devel/make.proc.rd
652057a57e3c8bac1afc30a8590e70c6 *Devel/pomp.interface.r
07eb12b7f022f7e765803f2d27aaec68 *Devel/pomp.skeleton_test.r
7c3d1180244bc1cfb178557a3f61f1f1 *Devel/profile.covariance.rep.rd
593c23f62667bde4574642f1467930a6 *Devel/setup.rd
d6d7a78f4c1850292fe272246063aeea *Devel/srk2.shortcut.r
adf14f1ef7bd43f13c31902127bf657f *Devel/testSRK2.r
bd1f5b3ca9a36961342ee9f4dd1b3bfa *INDEX
e058327ef58151135066e868e2e97a83 *MatlabCollocInfer/ChemoStat/chemo_fun.m
a372fc6c4c366648761a5c51d3901d8e *MatlabCollocInfer/ChemoStat/chemo_fun_tmp.m
cbdfe07a7cd992420ad533843f35dca5 *MatlabCollocInfer/ChemoStat/chemo_obs.m
90330bf663279b73eef59b48a034bc23 *MatlabCollocInfer/ChemoStat/chemo_ode.m
d2847b6df854d34355e006822de0b177 *MatlabCollocInfer/CollocInfer.m
793b797f681bbb76d4a3673fd0b8887b *MatlabCollocInfer/CollocInferPlots.asv
6bfc108841810de600dce99033c6e171 *MatlabCollocInfer/CollocInferPlots.m
b7cf790a604ffdf7eddd76140e3c9e13 *MatlabCollocInfer/CollocInferUtility.m
5587fcdffae99178f5d7fb6a82b52f2a *MatlabCollocInfer/FHN_data.txt
2c0557b5c521ec6aeee9084d6ddd9c94 *MatlabCollocInfer/FHNdata.txt
04781c8ef44323bc0e3bda792930e236 *MatlabCollocInfer/FHNtry.m
4ae13a60d3733cd014441349290cbaaa *MatlabCollocInfer/FhNEx.m
2c0557b5c521ec6aeee9084d6ddd9c94 *MatlabCollocInfer/FhNdata
b8fe0f189c8daf101e402a35b82b3ace *MatlabCollocInfer/FitMatchCoefs.m
1d194b19bbb84dfffc258c11c3bbb43f *MatlabCollocInfer/FitMatchOpt.m
dab0b72ab0761a2a748419519ebab143 *MatlabCollocInfer/Henon/make_Henon.m
51fbecf74d4b9d0604d217b0ec0bce6e *MatlabCollocInfer/IntegrateForward.m
e46148b590aa246c2621b66871fc9983 *MatlabCollocInfer/LS_setup.asv
3e2a1cad2771f89ffafff8d3da86b25f *MatlabCollocInfer/LS_setup.m
efeb44e48b971da598d7e3163f8b2aef *MatlabCollocInfer/NS/NS_d2fdx2.m
ba10b99df0aeda8e48157912b7204257 *MatlabCollocInfer/NS/NS_d2fdxdp.m
5a36deada3495a19df2f82b92575f70a *MatlabCollocInfer/NS/NS_dfdp.m
0047d6af911e897d508c30b62fecf5c4 *MatlabCollocInfer/NS/NS_dfdx.m
0170baa6baadf33f01606c2839137639 *MatlabCollocInfer/NS/NS_fn.m
23ef435e0a365bb4ca064e331b5b1839 *MatlabCollocInfer/NS/NS_fun.m
a7d4f32e32075d50685f94e32ac8b3df *MatlabCollocInfer/NS/NS_ode.m
5c857d6d58202e605d1b20134aa6c724 *MatlabCollocInfer/NS/make_NS.m
1a85fe40873ad21a781ffbb782f125ec *MatlabCollocInfer/NorthShoreData.mat
8f724816969973be18814f36af5765af *MatlabCollocInfer/ParsMatch.m
576414c2e9d09f7ff701ad223a86c246 *MatlabCollocInfer/ParsMatchOpt.m
755501d01c5aaf1d71175e328767f9cf *MatlabCollocInfer/ProfileCovariance.asv
7e285f9c09875c47fa02b5bf386d0924 *MatlabCollocInfer/ProfileErr.m
654c1265e271167fab4930e99bf55273 *MatlabCollocInfer/ProfileErr_AllPar.m
d97e9c4538789967938f3d49cb49ee91 *MatlabCollocInfer/ProfileErr_AllPar_scrap.m
af8ef0350c95426d989179ab629cf2e8 *MatlabCollocInfer/ProfileSSE.m
369f438a815d85c01a31b3a5f93609e3 *MatlabCollocInfer/ProfileSSE_AllPar.m
fd1bd276fdd8dcd1d1e8aff23188c20d *MatlabCollocInfer/Profile_GausNewt.m
392ec1fc4708c2ebc61f4efcef4f0107 *MatlabCollocInfer/Profile_LS.m
aca38958e7ac0c6c9787d6677661c9f9 *MatlabCollocInfer/Profile_multinorm.m
3d063339fca23e2f27636544968036ef *MatlabCollocInfer/Rcode/Cproc.R
d4d967f1c6566e8ebc26040aa7dbe6a5 *MatlabCollocInfer/Rcode/Diagnostics.R
b0e485aa5efb1a17748276dd752f1ada *MatlabCollocInfer/Rcode/Dproc.R
5b250c41ba488846b84e4fa971982258 *MatlabCollocInfer/Rcode/FHN.try.R
8b4f3fa7aa6ec3adab2baad5507cdd9d *MatlabCollocInfer/Rcode/Henon.R
6ccc311327cae5300bfa7899ff1ecf6d *MatlabCollocInfer/Rcode/InnerOptimization.r
0a4c8264caacf19694a9ca3c18ced43d *MatlabCollocInfer/Rcode/LS.setup.R
02aa99a33d233d780c9e2d5acff29fae *MatlabCollocInfer/Rcode/Multinorm.R
24aa666f2a5a4b7d26c3a3986a9efd70 *MatlabCollocInfer/Rcode/Profile.LS.R
310d6bd13a94c479201b88c58d74a1ed *MatlabCollocInfer/Rcode/ProfileR.R
d4aec0b22d337ee0341545371874e5a7 *MatlabCollocInfer/Rcode/SEIR.r
91ed5a597fb8fc5922fc14f5ec829ff4 *MatlabCollocInfer/Rcode/SSElik.R
925dce488874275124dc5cbb1fd7561d *MatlabCollocInfer/Rcode/SSEproc.R
8c68985fb6e9e43c0746d13fc059d62a *MatlabCollocInfer/Rcode/Smooth.LS.R
ab65a4ebda7cf09a0ef04f75fe6853d1 *MatlabCollocInfer/Rcode/cvar.R
43ee82cf89013ff815138c850fba50f6 *MatlabCollocInfer/Rcode/exp.Cproc.R
e67ad9eb38866ee1cf26a58243bb5c60 *MatlabCollocInfer/Rcode/exp.Dproc.R
65f71c28ffd12381cb276c1cf42db0a7 *MatlabCollocInfer/Rcode/fhn.R
f35a4d67f3cf4a4d241dea5d03a0acd7 *MatlabCollocInfer/Rcode/findif.loglik.R
6105042b5271fa9bc63f953642ff7373 *MatlabCollocInfer/Rcode/findif.ode.R
69b68dc716506b7d6793329a3ac3ded2 *MatlabCollocInfer/Rcode/findif.var.R
1006d0e78fcfb36257b1861f8b0c457f *MatlabCollocInfer/Rcode/genlin.R
1acfb0b276567040d5c2b87236327257 *MatlabCollocInfer/Rcode/inneropt.R
fb393c3b1d5ce0dd819127300ea90c01 *MatlabCollocInfer/Rcode/logstate.lik.R
e388ad49b410f1ca3d0eda0a913123b1 *MatlabCollocInfer/Rcode/logtrans.R
d31cb4516f39b5dfe5b9953078cdf3d8 *MatlabCollocInfer/Rcode/ls.shortcut.r
5da668ce666391ff2d1598a01761ea3b *MatlabCollocInfer/Rcode/make.fhn.R
2c04eaea05755f747ee07cd6c49cc716 *MatlabCollocInfer/Rcode/makeexp.R
6e5e8ffde6b08024a7d602a4f9d6a02a *MatlabCollocInfer/Rcode/makeid.R
8f219d662f7c905c1257c52c1abb831d *MatlabCollocInfer/Rcode/multinorm.shortcut.r
811b2cfadf640bd940118c1525e12196 *MatlabCollocInfer/SEIR/SEIR_d2fdx2.m
81669c97ac5b6fc49f3763ed54fc9b22 *MatlabCollocInfer/SEIR/SEIR_d2fdxdp.m
42c2347d8222d49f3c4b230d239ac4d1 *MatlabCollocInfer/SEIR/SEIR_dfdp.m
c8a46d3961ead48c045329af2c99b50a *MatlabCollocInfer/SEIR/SEIR_dfdx.m
8b4af6dd9c660a9bc895998fdd9437a1 *MatlabCollocInfer/SEIR/SEIR_fun.m
f00101de53be38c1004752081a621181 *MatlabCollocInfer/SEIR/SEIR_ode.m
8d1d0f450c981832480373b0b9115e12 *MatlabCollocInfer/SEIR/SEIR_var_d2fdx2.m
3627625db73447e5d29435a365bf0d26 *MatlabCollocInfer/SEIR/SEIR_var_d2fdxdp.m
03659e818f7d3577c4feb85630583039 *MatlabCollocInfer/SEIR/SEIR_var_dfdp.m
0c675fa44bbd10ea7bb4c40adbd9c7fd *MatlabCollocInfer/SEIR/SEIR_var_dfdx.m
436674f33ae710d06e79a59f4438a83b *MatlabCollocInfer/SEIR/SEIR_var_fun.m
44a967bd3a84f4b406d62f3fc4189953 *MatlabCollocInfer/SEIR/make_SEIR.m
1923eef29c62f4aa56ddce5d0c60fdb1 *MatlabCollocInfer/SEIR/make_var_SEIR.m
28c57bef0c9d3606765122b796b3a386 *MatlabCollocInfer/SEIRdata.txt
b44a1467cf59a52d93217b3d27f5ff94 *MatlabCollocInfer/SSE/SSE.m
641123300ec13cdb26b5feb2761dd365 *MatlabCollocInfer/SSE/SSE_proc.m
743482f81fccf636b638c58c4098c69c *MatlabCollocInfer/SSE/d2SSE_dx2.m
f396178b4b4505c8137acf8a03855698 *MatlabCollocInfer/SSE/d2SSE_dxdp.m
35989568b7c698ca866cf3f358a8200a *MatlabCollocInfer/SSE/d2SSE_dxdy.m
6a8fc6af9fbe9c4460ebd217ec639d8d *MatlabCollocInfer/SSE/d2SSE_dy2.m
65a68b0ae21483cdfe3bf3c259e2f096 *MatlabCollocInfer/SSE/d2SSE_dydp.m
ce9980cb869026d7b90f26b2edd8b937 *MatlabCollocInfer/SSE/d2SSE_proc_dc2.m
be92461ba7d6c535eba4c93b7d35cd07 *MatlabCollocInfer/SSE/d2SSE_proc_dcdp.m
cf8fddef954911d9bb51fd8139cf300d *MatlabCollocInfer/SSE/dSSE_dp.m
9f26f1cc9fc14f4de4ef11a6be514c14 *MatlabCollocInfer/SSE/dSSE_dx.m
c26e96a6b0feafe98b2a8f6de9e1688f *MatlabCollocInfer/SSE/dSSE_dy.m
d51d07c4b2f65237fa6b2625cd0d1621 *MatlabCollocInfer/SSE/dSSE_proc_dc.m
4b0eeb3071b986969f6fa80a44396196 *MatlabCollocInfer/SSE/dSSE_proc_dp.m
c5739a2796524f6936d204c412e73820 *MatlabCollocInfer/SSE/make_SSElik.m
9e4676570e5f09a3a3a1b34b2ca8f14c *MatlabCollocInfer/SSE/make_SSEproc.m
4ec0110cab2f58c0786c815f9c427c76 *MatlabCollocInfer/Smooth_LS.m
d86a4355228ea5858caa23a18888326c *MatlabCollocInfer/SplineCoefs.m
99ed1bbcb35aa2e86dec03672c429f62 *MatlabCollocInfer/SplineEst_NewtRaph.m
51a0b42c86041c9f50a576ac727d2994 *MatlabCollocInfer/applysum.m
6397d9159fcbc50b0f0b548bd351623f *MatlabCollocInfer/blocks2mat.m
3e692286997d72a3f5d226fb96b3b453 *MatlabCollocInfer/checkmore_cvar.m
7b9b284b14081b305e0cb9b2a71058e1 *MatlabCollocInfer/checkmore_genlin.m
81cc025ef2f37e2d24c9a5c2ec0df72c *MatlabCollocInfer/checkweights.m
1de7a91983fe80c656af6d8a39f09619 *MatlabCollocInfer/coefsformat.m
41b158769151937623d408d1f71f000d *MatlabCollocInfer/dataformat.m
7411ca736d00b8308353199ed2627944 *MatlabCollocInfer/demos/ChemoData.txt
f6a3c2b42faad10d177e1d8a9793b1bb *MatlabCollocInfer/demos/ChemoStatDemo.m
175120acab19f520db474eaaa62ffc9d *MatlabCollocInfer/demos/ChemoStatDemo_new.asv
fdf1d1416c5eb8ec94764daaec28d172 *MatlabCollocInfer/demos/ChemoStatDemo_new.m
c03bc4a233cafaf2e2ddc33d3b625d4f *MatlabCollocInfer/demos/ChemoStatDemo_old.m
d81b7d1f158bd1dee58e297dc58ce226 *MatlabCollocInfer/demos/ChemoStatDemo_tmp.m
b5b19c60e64416380fa5e92e51208cb4 *MatlabCollocInfer/demos/FhNDemo.m
ed878c07aad64a5de05aabd1557d5ad6 *MatlabCollocInfer/demos/NSdata.txt
6f3f79feef69fbfc456f678f1131b9fa *MatlabCollocInfer/demos/NSdemo.m
5967dae2cd32a57488032ca9bfaecce8 *MatlabCollocInfer/demos/SEIRDemo.m
8c398724cdaaa4624572a98a51ef9d62 *MatlabCollocInfer/demos/SEIRcoefs2.txt
28c57bef0c9d3606765122b796b3a386 *MatlabCollocInfer/demos/SEIRdata.txt
5faf6f2959019bb2d37f167c7408908f *MatlabCollocInfer/demos/SEIRdemo_Routput.txt
9618857b2fc743687c89a9a6c9e13311 *MatlabCollocInfer/demos/demos.m
28089cec07eccef99b48190ed96994a4 *MatlabCollocInfer/demos/demos.r
526296b031f6245570cc94e7c8c4812b *MatlabCollocInfer/demos/groundwater.m
97a3796a30bb4d25ea385a7ea0e7be14 *MatlabCollocInfer/demos/groundwater.txt
ba1a95af81f91005610ef24e7a78f891 *MatlabCollocInfer/demos/rainfall.txt
2f0c106d975710b50f042ff5ae069dfd *MatlabCollocInfer/devel/ProfileCovariance.m
bea9b30222b574b70bc0a6002b909893 *MatlabCollocInfer/exp/exp_Cproc.m
7bd1a502f7858195f9f397d1f52d7631 *MatlabCollocInfer/exp/exp_Dproc.m
5daf7c87c8667e7332a484225a9d85ae *MatlabCollocInfer/exp/exp_d2Cproc_dc2.m
aad0af13029897b70e1c95679aa1b377 *MatlabCollocInfer/exp/exp_d2Cproc_dcdp.m
e195aef0af6db1fe60f16e072a038ba4 *MatlabCollocInfer/exp/exp_d2Dproc_dc2.m
7fefd7a5800563b0ba61d60bf4125a52 *MatlabCollocInfer/exp/exp_d2fdx2.m
86cfc17127394488732a758392a31fd6 *MatlabCollocInfer/exp/exp_d2fdxdp.m
98da8c2a18cc2901218181de0f9d26b8 *MatlabCollocInfer/exp/exp_dCproc_dc.m
a50819e6a9d2af3fb60350c096e56256 *MatlabCollocInfer/exp/exp_dCproc_dp.m
d4363b2c7997e6bb2e079b9083d748c9 *MatlabCollocInfer/exp/exp_dDproc_dc.m
49b1fd574033df45c55a623302f98f3f *MatlabCollocInfer/exp/exp_dDproc_dp.m
2447e5f96d77d4a41d7e6799ebb859c0 *MatlabCollocInfer/exp/exp_dfdp.m
c78217b7db4830366641a0159cce2e3f *MatlabCollocInfer/exp/exp_dfdx.m
4b17507d3d20d87f03508469c59514da *MatlabCollocInfer/exp/exp_fn.m
30087283191a4cf549a82263fa8fe7fa *MatlabCollocInfer/exp/make_exp.m
03dfcfc40e44aa5cc745daf4943e21e4 *MatlabCollocInfer/exp/make_exp_Cproc.m
d49630b0de3e6d77f5e724c64eea5a0d *MatlabCollocInfer/exp/make_exp_Dproc.m
fc58e4fa4e1ef8c19373a0fbe4f4b005 *MatlabCollocInfer/exp_d2Dproc_dcdp.m
9bcc7f2f5522737b49642fcf0dcf9630 *MatlabCollocInfer/exptrans/exptrans_d2fdx2.m
8c9d61ec9f43d56a826159590c31f446 *MatlabCollocInfer/exptrans/exptrans_d2fdxd.m
402e6327061341af5a385e9c8abcd97a *MatlabCollocInfer/exptrans/exptrans_dfd.m
402e6327061341af5a385e9c8abcd97a *MatlabCollocInfer/exptrans/exptrans_dfdp.m
4362a060f9feb0c2a98ab5b76757e9c3 *MatlabCollocInfer/exptrans/exptrans_dfdx.m
40119027732f8b1f5fa902f724a56731 *MatlabCollocInfer/exptrans/exptrans_fun.m
e6b0eeb847feabd52defd63e26a221ae *MatlabCollocInfer/exptrans/make_exptrans.m
e004668bf84e148bdd52b1922c963413 *MatlabCollocInfer/fhn/fhn_d2fdx2.m
c61e77462705f136ed3fb6c55ee0d559 *MatlabCollocInfer/fhn/fhn_d2fdxdp.m
04bc4cc76089f0f4f947edb4cf19fae8 *MatlabCollocInfer/fhn/fhn_dfdp.m
4b8fa2fe12ace719c664c5feff3064e6 *MatlabCollocInfer/fhn/fhn_dfdx.m
ca286964ae2debb42c232e893433d256 *MatlabCollocInfer/fhn/fhn_fun.m
667fa4a7fd51a36eaee360a5bc1674ca *MatlabCollocInfer/fhn/fhn_fun_ode.m
6a9977d2187fd31ede75393881b8e6ef *MatlabCollocInfer/fhn/make_fhn.m
c4de929450100e56d9d9c7a41b3fe029 *MatlabCollocInfer/findif/findif_loglik_d2fdx2.m
255e8c3ada828ddcb8cc396ececd55a4 *MatlabCollocInfer/findif/findif_loglik_d2fdxdp.m
15c3a1459ca19adf07b947ec36747113 *MatlabCollocInfer/findif/findif_loglik_d2fdxdy.m
9792bb9c7fe7c4ecb3ca3b36b212edf7 *MatlabCollocInfer/findif/findif_loglik_d2fdy2.m
ab919bd4082aeb2357e410da9e8bbea2 *MatlabCollocInfer/findif/findif_loglik_d2fdydp.m
00768eb9b8949ece5923ecbb6284d777 *MatlabCollocInfer/findif/findif_loglik_dfdp.m
716f1f1a3a18ca8822147d2d2a46ffd1 *MatlabCollocInfer/findif/findif_loglik_dfdx.m
e442381b2e3c33da214a4323858b5306 *MatlabCollocInfer/findif/findif_loglik_dfdy.m
f4cf6700f3e41018dccf35fe96fae8c1 *MatlabCollocInfer/findif/findif_loglik_fun.m
b2dd28942aec90ed77049d4e004ac882 *MatlabCollocInfer/findif/findif_ode_d2fdx2.m
b35414ff26f71635dcb08832a6a2b716 *MatlabCollocInfer/findif/findif_ode_d2fdxdp.m
14d53fa58a00e919ebbbe55c6b2099ce *MatlabCollocInfer/findif/findif_ode_dfdp.m
1ab71af93f967d62d1044b4a74c4bd12 *MatlabCollocInfer/findif/findif_ode_dfdx.m
46ee2252a4be251d3a384e71df80aacc *MatlabCollocInfer/findif/findif_ode_fn.m
0e633c823bae3caa6750398b9ee4abe4 *MatlabCollocInfer/findif/findif_var_d2fdx2.m
10827ca82db0ce93ac95c0a8cc31c155 *MatlabCollocInfer/findif/findif_var_dfdp.m
99874279c1df47217427487e4dba8011 *MatlabCollocInfer/findif/findif_var_dfdx.m
a7c1541b84f94d01d41fa6e127e89ffb *MatlabCollocInfer/findif/findif_var_fun.m
5fc29ad30dff0a497929a36077aebda3 *MatlabCollocInfer/findif/make_findif_loglik.m
077716d09d8332b400881b16e140bad6 *MatlabCollocInfer/findif/make_findif_ode.m
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