# Tools to Create, Use, and Convert ecocomDP Data

## Documentation for package ‘ecocomDP’ version 1.3.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

annotation_dictionary | Annotations of published data
ants_L0_flat | Joined and flat version of EDI data package knb-lter-hfr.118.33
ants_L1 | The ecocomDP (L1) version of EDI data package knb-lter-hfr.118.33
calc_geo_extent_bounding_box_m2 | Calculate geo_extent_bounding_box_m2 for the dataset_summary table
calc_length_of_survey_years | Calculate length_of_survey_years for the dataset_summary table
calc_number_of_years_sampled | Calculate number_of_years_sampled for the dataset_summary table
calc_std_dev_interval_betw_years | Calculate std_dev_interval_betw_years for the dataset_summary table
convert_to_dwca | Convert a dataset to the Darwin Core Archive format
create_dataset_summary | Create the dataset_summary table
create_eml | Create EML metadata
create_location | Create the location table
create_location_ancillary | Create the location_ancillary table
create_observation | Create the observation table
create_observation_ancillary | Create the observation_ancillary table
create_taxon | Create the taxon table
create_taxon_ancillary | Create the taxon_ancillary table
create_variable_mapping | Create the variable_mapping table
flatten_data | Flatten a dataset
plot_sample_space_time | Plot dates and times samples were collected or observations were made
plot_sites | Plot sites on US map
plot_taxa_abund | Plot mean taxa abundances per 'observation_id'
plot_taxa_accum_sites | Plot taxa accumulation by site accumulation
plot_taxa_accum_time | Plot taxa accumulation through time
plot_taxa_diversity | Plot diversity (taxa richness) through time
plot_taxa_occur_freq | Plot taxon occurrence frequencies
plot_taxa_rank | Plot taxa ranks
plot_taxa_shared_sites | Plot number of unique taxa shared across sites
read_data | Read published data
save_data | Save a dataset
search_data | Search published data
validate_data | Validate tables against the model
write_tables | Write tables to file