# Graphical Multiple Comparison Procedures

## Documentation for package ‘graphicalMCP’ version 0.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

adjust_p_bonferroni | Calculate adjusted p-values
adjust_p_hochberg | Calculate adjusted p-values
adjust_p_parametric | Calculate adjusted p-values
adjust_p_simes | Calculate adjusted p-values
adjust_weights_hochberg | Calculate adjusted hypothesis weights
adjust_weights_parametric | Calculate adjusted hypothesis weights
adjust_weights_simes | Calculate adjusted hypothesis weights
as_graphMCP | Convert between graphicalMCP, gMCP, and igraph graph classes
as_graphMCP.initial_graph | Convert between graphicalMCP, gMCP, and igraph graph classes
as_igraph | Convert between graphicalMCP, gMCP, and igraph graph classes
as_igraph.initial_graph | Convert between graphicalMCP, gMCP, and igraph graph classes
as_initial_graph | Convert between graphicalMCP, gMCP, and igraph graph classes
as_initial_graph.graphMCP | Convert between graphicalMCP, gMCP, and igraph graph classes
as_initial_graph.igraph | Convert between graphicalMCP, gMCP, and igraph graph classes
bonferroni | Example graphs of commonly used multiple comparison procedures
bonferroni_holm | Example graphs of commonly used multiple comparison procedures
bonferroni_holm_weighted | Example graphs of commonly used multiple comparison procedures
bonferroni_weighted | Example graphs of commonly used multiple comparison procedures
dunnett_closure_weighted | Example graphs of commonly used multiple comparison procedures
dunnett_single_step | Example graphs of commonly used multiple comparison procedures
dunnett_single_step_weighted | Example graphs of commonly used multiple comparison procedures
fallback | Example graphs of commonly used multiple comparison procedures
fallback_improved_1 | Example graphs of commonly used multiple comparison procedures
fallback_improved_2 | Example graphs of commonly used multiple comparison procedures
fixed_sequence | Example graphs of commonly used multiple comparison procedures
graph_calculate_power | Calculate power values for a graphical multiple comparison procedure
graph_create | Create the initial graph for a multiple comparison procedure
graph_generate_weights | Generate the weighting strategy based on a graphical multiple comparison procedure
graph_rejection_orderings | Find alternate rejection orderings (sequences) for shortcut tests
graph_test_closure | Perform closed graphical multiple comparison procedures
graph_test_shortcut | Perform shortcut (sequentially rejective) graphical multiple comparison procedures
graph_test_shortcut_gsd | Perform shortcut graphical multiple comparison procedures with group sequential designs
graph_update | Obtain an updated graph by updating an initial graphical after deleting hypotheses
gs_boundaries | Compute group sequential boundaries from an alpha spending function
gs_corr | Compute the correlation matrix for group sequential test statistics
hochberg | Example graphs of commonly used multiple comparison procedures
hommel | Example graphs of commonly used multiple comparison procedures
huque_etal | Example graphs of commonly used multiple comparison procedures
plot.initial_graph | S3 plot method for class 'initial_graph'
plot.updated_graph | S3 plot method for the class 'updated_graph'
print.graph_report | S3 print method for the class 'graph_report'
print.gsd_graph_report | S3 print method for the class 'gsd_graph_report'
print.initial_graph | S3 print method for the class 'initial_graph'
print.power_report | S3 print method for the class 'power_report'
print.updated_graph | S3 print method for the class 'updated_graph'
random_graph | Example graphs of commonly used multiple comparison procedures
repeated_p | Calculate the repeated p-value for a single hypothesis at a given analysis
sequential_p | Calculate the sequential p-value for a single hypothesis
sidak | Example graphs of commonly used multiple comparison procedures
simple_successive_1 | Example graphs of commonly used multiple comparison procedures
simple_successive_2 | Example graphs of commonly used multiple comparison procedures
spending_hsd | Alpha spending functions for group sequential designs
spending_linear | Alpha spending functions for group sequential designs
spending_of | Alpha spending functions for group sequential designs
spending_pocock | Alpha spending functions for group sequential designs
spending_with_time | Create a spending function with a custom spending time
spending_wt | Wang-Tsiatis spending function
three_doses_two_primary_two_secondary | Example graphs of commonly used multiple comparison procedures
two_doses_two_primary_two_secondary | Example graphs of commonly used multiple comparison procedures