EssGraph-class          Class '"EssGraph"'
GaussL0penIntScore-class
                        Class '"GaussL0penIntScore"'
GaussL0penObsScore-class
                        Class '"GaussL0penObsScore"'
GaussParDAG-class       Class '"GaussParDAG"' of Gaussian Causal Models
LINGAM                  Linear non-Gaussian Acyclic Models (LiNGAM)
ParDAG-class            Class '"ParDAG"' of Parametric Causal Models
Score-class             Virtual Class "Score"
addBgKnowledge          Add background knowledge to a CPDAG or PDAG
adjustment              Compute adjustment sets for covariate
                        adjustment.
ages                    Estimate an APDAG within the Markov equivalence
                        class of a DAG using AGES
amatType                Types and Display of Adjacency Matrices in
                        Package 'pcalg'
backdoor                Find Set Satisfying the Generalized Backdoor
                        Criterion (GBC)
beta.special            Compute set of intervention effects
beta.special.pcObj      Compute set of intervention effects in a fast
                        way
binCItest               G square Test for (Conditional) Independence of
                        Binary Variables
checkTriple             Check Consistency of Conditional Independence
                        for a Triple of Nodes
compareGraphs           Compare two graphs in terms of TPR, FPR and TDR
condIndFisherZ          Test Conditional Independence of Gaussians via
                        Fisher's Z
corGraph                Computing the correlation graph
dag2cpdag               Convert a DAG to a CPDAG
dag2essgraph            Convert a DAG to an Essential Graph
dag2pag                 Convert a DAG with latent variables into a PAG
disCItest               G square Test for (Conditional) Independence of
                        Discrete Variables
dreach                  Compute D-SEP(x,y,G)
dsep                    Test for d-separation in a DAG
dsepAM                  Test for d-separation in a MAG
dsepAMTest              Test for d-separation in a MAG
dsepTest                Test for d-separation in a DAG
fci                     Estimate a PAG with the FCI Algorithm
fciAlgo-class           Class "fciAlgo" of FCI Algorithm Results
fciPlus                 Estimate a PAG with the FCI+ Algorithm
find.unsh.triple        Find all Unshielded Triples in an Undirected
                        Graph
gAlgo-class             Class '"gAlgo"'
gac                     Test If Set Satisfies Generalized Adjustment
                        Criterion (GAC)
gds                     Greedy DAG Search to Estimate Markov
                        Equivalence Class of DAG
ges                     Estimate the Markov equivalence class of a DAG
                        using GES
getGraph                Get the "graph" Part or Aspect of R Object
getNextSet              Iteration through a list of all combinations of
                        choose(n,k)
gies                    Estimate Interventional Markov Equivalence
                        Class of a DAG by GIES
gmB                     Graphical Model 5-Dim Binary Example Data
gmD                     Graphical Model Discrete 5-Dim Example Data
gmG                     Graphical Model 8-Dimensional Gaussian Example
                        Data
gmI                     Graphical Model 7-dim IDA Data Examples
gmInt                   Graphical Model 8-Dimensional Interventional
                        Gaussian Example Data
gmL                     Latent Variable 4-Dim Graphical Model Data
                        Example
ida                     Estimate Multiset of Possible Joint Total
                        Causal Effects
idaFast                 Multiset of Possible Total Causal Effects for
                        Several Target Var.s
iplotPC                 Plotting a pcAlgo object using the package
                        igraph
isValidGraph            Check for a DAG, CPDAG or a maximally oriented
                        PDAG
jointIda                Estimate Multiset of Possible Total Joint
                        Effects
legal.path              Check if a 3-node-path is Legal
mat2targets             Conversion between an intervention matrix and a
                        list of intervention targets
mcor                    Compute (Large) Correlation Matrix
opt.target              Get an optimal intervention target
optAdjSet               Compute the optimal adjustment set
pag2anc                 Reads off identifiable ancestors and
                        non-ancestors from a directed PAG
pag2conf                Reads off identifiable unconfounded node pairs
                        from a directed PAG
pag2edge                Reads off identifiable parents and non-parents
                        from a directed PAG
pag2magAM               Transform a PAG into a MAG in the Corresponding
                        Markov Equivalence Class
pc                      Estimate the Equivalence Class of a DAG using
                        the PC Algorithm
pc.cons.intern          Utility for conservative and majority rule in
                        PC and FCI
pcAlgo                  PC-Algorithm [OLD]: Estimate Skeleton or
                        Equivalence Class of a DAG
pcAlgo-class            Class "pcAlgo" of PC Algorithm Results, incl.
                        Skeleton
pcSelect                PC-Select: Estimate subgraph around a response
                        variable
pcSelect.presel         Estimate Subgraph around a Response Variable
                        using Preselection
pcalg2dagitty           Transform the adjacency matrix from 'pcalg'
                        into a 'dagitty' object
pcorOrder               Compute Partial Correlations
pdag2allDags            Enumerate All DAGs in a Markov Equivalence
                        Class
pdag2dag                Extend a Partially Directed Acyclic Graph
                        (PDAG) to a DAG
pdsep                   Estimate Final Skeleton in the FCI algorithm
plotAG                  Plot partial ancestral graphs (PAG)
plotSG                  Plot the subgraph around a Specific Node in a
                        Graph Object
possAn                  Find possible ancestors of given node(s).
possDe                  Find possible descendants of given node(s).
possibleDe              [DEPRECATED] Find possible descendants on
                        definite status paths.
qreach                  Compute Possible-D-SEP(x,G) of a node x in a
                        PDAG G
r.gauss.pardag          Generate a Gaussian Causal Model Randomly
randDAG                 Random DAG Generation
randomDAG               Generate a Directed Acyclic Graph (DAG)
                        randomly
rfci                    Estimate an RFCI-PAG using the RFCI Algorithm
rmvDAG                  Generate Multivariate Data according to a DAG
rmvnorm.ivent           Simulate from a Gaussian Causal Model
searchAM                Search for certain nodes in a DAG/CPDAG/MAG/PAG
shd                     Compute Structural Hamming Distance (SHD)
showAmat                Show Adjacency Matrix of pcAlgo object
showEdgeList            Show Edge List of pcAlgo object
simy                    Estimate Interventional Markov Equivalence
                        Class of a DAG
skeleton                Estimate (Initial) Skeleton of a DAG using the
                        PC / PC-Stable Algorithm
trueCov                 Covariance matrix of a DAG.
udag2apag               Last step of RFCI algorithm: Transform
                        partially oriented graph into RFCI-PAG
udag2pag                Last steps of FCI algorithm: Transform Final
                        Skeleton into FCI-PAG
udag2pdag               Last PC Algorithm Step: Extend Object with
                        Skeleton to Completed PDAG
visibleEdge             Check visible edge.
wgtMatrix               Weight Matrix of a Graph, e.g., a simulated DAG
