ash                     'asinh' data transformation
backtrace               Back-tracing step of the 'segmenTier'
                        algorithm.
calculateScore          segmenTier's core dynamic programming routine
                        in Rcpp
clusterCor_c            Calculates position-cluster correlations for
                        scoring function "icor".
clusterTimeseries       Cluster a processed time-series with k-means.
colorClusters           Assign colors to clusters.
flowclusterTimeseries   Cluster a processed time-series with
                        'flowClust' & 'flowMerge'.
logLik.kmeans           Experimental: AIC/BIC for kmeans
log_1                   log transformation handling zeros by adding 1
myPearson               Pearson product-moment correlation coefficient
plot.clustering         Plot method for the "clustering" object.
plot.segments           Plot method for the "segments" object.
plot.timeseries         Plot method for the "timeseries" object.
plotSegmentation        Summary plot for the 'segmenTier' pipeline.
plotdev                 Switch between plot devices.
print.segments          Print method for segmentation result from
                        'segmentClusters'.
processTimeseries       Process a time-series for clustering and
                        segmentation.
segmenTier              segmenTier : cluster-based segmentation from a
                        sequential clustering
segmentCluster.batch    Batch wrapper for 'segmentClusters'.
segmentClusters         Run the 'segmenTier' algorithm.
setVarySettings         Parameters for 'segmentCluster.batch'.
sortClusters            Sort clusters by similarity.
tsd                     Transcriptome time-series from budding yeast.
