Respiratory Viral Infection Forecast Reporting
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Documentation for package ‘ViroReportR’ version 1.0.3
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| clean_sample_data | Clean and validate case count data for EpiEstim |
| create_quantiles | summarise a data frame 'd' by groups along a 'variable' |
| current_forecast_text | Print out text output for ViroReportR report detailing current number of case visits, last value of Rt and corresponding intervals |
| fit_epiestim_model | fit_epiestim_model - Function to estimate the reproduction number of an epidemic |
| forecast_metrics | Extract current forecast metrics: forecast prediction, percentile interval and Rt value |
| generate_forecast | Forecast daily epidemic cases using EpiEstim |
| generate_forecast_report | Generate Viral Respiratory Forecast Report |
| generate_validation | Validate forecast performance over multiple time windows |
| generate_validation_metric | Compute Forecast Validation Metrics (SMAPE & MASE) |
| get_aggregated_data | Extract Aggregated Weekly Generic Data |
| plot_rt | Plot Mean Rt with time index (dates) |
| plot_validation | Plot a ribbon plot with each time horizon predictions against true values for validation |
| project_epiestim_model | Extract daily forecast samples |
| simulate_data | Simulate Daily Virus Incidence Data |