Functional Data Analysis Pipeline, Extracting Functional Traits from Biological Time-Series Data

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Documentation for package ‘TimeTraits’ version 1.1.0

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TimeTraits-package TimeTraits: Functional Data Analysis Pipeline, Extracting Functional Traits from Biological Time-Series Data.
filter_curves Filter, detrend, and quality-control luminescence time-series data
functional_traits Functional PCA traits for circadian rhythm data
mydata_example Arabidopsis thaliana luciferase circadian rhythm dataset
select_basis_lambda_LOOCV Select optimal number of basis functions and smoothing parameter
smooth_fun Smooth circadian time-series data with optional shape-based outlier detection
TimeTraits TimeTraits: Functional Data Analysis Pipeline, Extracting Functional Traits from Biological Time-Series Data.